Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007725 (fadI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007725 showshow history
Names
fadI yfcY JW2339 ECK2336 b2342
Product
beta-ketoacyl-CoA thiolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2459159 2460469 1311 437
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000868
EnteroFam0007725: Trusted threshold=1144.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR012806 (IPR012806 Acetyl-CoA C-acyltransferase FadI) Apr 2008
Automated Process Approved IPR002155 (IPR002155 Thiolase) Apr 2008
Automated Process Approved IPR020617 (IPR020617 Thiolase, C-terminal) Jul 2018
Automated Process Approved IPR020616 (IPR020616 Thiolase, N-terminal) Jul 2018
Automated Process Approved IPR016039 (IPR016039 Thiolase-like) Jul 2018
Automated Process Approved PF02803 (PF02803 Thiolase, C-terminal domain) Jul 2018
Automated Process Approved PF00108 (PF00108 Thiolase, N-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020617, IPR020616, IPR002155, IPR016039
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0016042 lipid catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016039
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0003988 acetyl-CoA C-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012806
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020617, IPR020616, IPR002155
Reference: Escherichia coli K-12 MG1655
Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name fadI Experimental - PubMed ID: 12535077
Reference: Escherichia coli K-12 MG1655
Sep 2007
Automated Process Approved synonym yfcY Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym JW2339 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2336 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2342 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product beta-ketoacyl-CoA thiolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Oct 2021
Person Uncurated alternate product name putative acetyl-CoA acetyltransferase with thiolase domain Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative acyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007725: Trusted threshold=1144.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000868
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF02803 Thiolase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02803
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR020616 Thiolase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR020616
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR016039 Thiolase-like Protein Sequence Similarity - InterPro Domain: IPR016039
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR002155 Thiolase Protein Sequence Similarity - InterPro Domain: IPR002155
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR020617 Thiolase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR020617
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF00108 Thiolase, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00108
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR012806 Acetyl-CoA C-acyltransferase FadI Protein Sequence Similarity - InterPro Domain: IPR012806
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Automated Process Uncurated EC number 2.3.1.- Published Annotation - Database Name: EC2GO: GO:0016747
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Approved EC number 2.3.1.16 Published Annotation - Swiss-Prot Accession Number: P76503 Feb 2006
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG14128 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:948823 Published Annotation - Entrez Gene Database ID: 948823
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P76503 Published Annotation - Swiss-Prot Accession Number: P76503 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76503 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1788683 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0007725 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Uncurated molecular interaction Interacts with the product of yfcX ASAP:7723:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110
Mar 2005
Automated Process Approved note putative acyltransferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC75402.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020617, IPR020616, IPR002155, IPR016039
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0016042 lipid catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006631 fatty acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016039
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0003988 acetyl-CoA C-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012806
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020617, IPR020616, IPR002155
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012806
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000868 fadI CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000984 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001102 fadI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001656 fadI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002318 fadI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001785 fadI CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001664 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001371 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003118 fadI CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000962 fadI CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003195 fadI CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003893 fadI CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005988 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015398 fadI CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002881 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003818 fadI CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303439 fadI CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002629 fadI CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001201 fadI CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003183 fadI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005358 fadI CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002398 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008877 fadI CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002287 yfcY CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001984 fadI CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006889 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008224 fadI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005608 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079024 fadI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002698 fadI CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003099 fadI CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008226 fadI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005963 fadI CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002628 fadI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007072 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000712 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006827 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005348 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006792 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006375 fadI CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008325 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005606 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006111 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007044 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007393 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006805 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006273 fadI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007564 fadI CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027315 fadI CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008974 fadI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007166 fadI CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002913 fadI CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002207 yfcY CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002418 yfcY CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002882 fadI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002801 fadI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002732 fadI CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002717 fadI CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176879 fadI pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0002692 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002500 fadI CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133236 fadI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000044 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002633 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002476 fadI CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003570 fadI CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002733 yfcY CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001068 fadI CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007452 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002039 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001700 fadI CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002018 fadI CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002000 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002767 fadI CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001378 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010527 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001145 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005908 fadI CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063366 fadI CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001761 fadI CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004086 fadI CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000322 fadI CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007864 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144163 fadI CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000757 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006698 fadI CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000536 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002791 fadI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007006 fadI CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007662 yfcY CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007278 yfcY CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006137 fadI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006993 fadI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006295 fadI CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006726 fadI CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004377 fadI CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006132 fadI CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006940 fadI CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007321 fadI CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000476 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000475 fadI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000584 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007184 fadI CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004998 fadI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006695 fadI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006672 fadI CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110470 fadI CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082187 fadI CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002942 fadI CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097617 fadI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006889 fadI CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004396 fadI CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007247 fadI CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002337 fadI CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266699 CDS
Person Approved Go view Shigella boydii 227 ADV-0002629 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008131 fadI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005367 fadI CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002917 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073702 fadI CDS
Person Approved Go view Shigella flexneri 301 ABT-0088679 fadI CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002580 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002620 fadI CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001114 VC1046 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005725 fadI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001759 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003807 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000694 fadI CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001041 fadI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001106 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240114 fadI CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004488 fadI CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002524 fadI CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008344 fadI CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000594 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124504 fadI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004228 fadI CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005447 fadI CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001602 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006278 fadI CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005550 fadI CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031267 fadI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007326 fadI CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002642 fadI CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002408 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005713 fadI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005365 fadI CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002725 fadI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003257 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001778 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017482 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002898 fadI CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22620mutantTn5 InsertionRequest the StrainABE-0007725fadIb2342::Tn5KAN-I-SceI at position 1050 in Plus orientation ,+ pKD465Blattner Laboratory
FB23435mutantTn5 InsertionRequest the StrainABE-0007725fadIb2342::Tn5KAN-I-SceI at position 1050 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2454159 to 2465469
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285125yfcUpseudogenecomplement24523562455001Downstream
ABE-0007713yfcU_1CDSpcomplement24532652455001Downstream
ABE-0007715yfcVCDScomplement24550832455646Downstream
ABE-0007720sixACDScomplement24563272456812Downstream
ABE-0007723fadJCDScomplement24570152459159Overlaps Downstream
ABE-0007725fadICDScomplement24591592460469Matches
ABE-0007731yfcZCDScomplement24606502460934Upstream
ABE-0007740fadLCDSforward24613062462646Upstream
ABE-0007743yfdFCDSforward24630122464070Upstream
ABE-0007745mlaACDScomplement24642522465007Upstream
ABE-0007751yfdCCDSforward24653012466233Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.