Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007740 (fadL) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007740 showshow history
Names
fadL JW2341 ECK2338 ttr b2344
Product
long-chain fatty acid outer membrane transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2461306 2462646 1341 447
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000870
EnteroFam0007740: Trusted threshold=1054.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005017 (IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX)) Apr 2008
Automated Process Approved PF03349 (PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name fadL Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2338 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2341 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ttr Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b2344 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product long-chain fatty acid outer membrane transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name outer membrane porin, transport of long-chain fatty acids, sensitivity to phage T2 Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name long-chain fatty acid transport protein (outer membrane flp protein) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007740: Trusted threshold=1054.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000870
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) Protein Sequence Similarity - InterPro Domain: IPR005017
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Protein Sequence Similarity - PFAM Model Name: PF03349
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.4 (location of gene products; outer membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 8.1 (extrachromosomal; prophage genes and phage related functions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.52 (transport; substrate; fatty acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.2 (metabolism; carbon utilization; fatty acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.1.B.9 (transport; Channel-type Transporters; Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily); The FadL Outer Membrane Protein (FadL) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment The coordinates of fadL have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site predicted in EcoGene (EG10280) and by GeneMark.hmm using multiple models, removing 2 codons from the N-terminus. Published Annotation in EcoGene - EG Number: EG10280
Reference: Escherichia coli K-12 MG1655 		Apr 2007
Person Approved db xref UniProtKB:P10384 Published Annotation - Swiss-Prot Accession Number: P10384 Jan 2005
Automated Process Approved db xref GeneID:946820 Published Annotation - Entrez Gene Database ID: 946820
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:145693163 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P10384 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007740 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10280 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note long-chain fatty acid transport protein (outer membrane flp protein); GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane; GO_process: GO:0019395 - fatty acid oxidation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75404.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Outer Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subfeatures signal peptide:aa 1_25 Experimental - PubMed ID: 1987139
Reference: Escherichia coli K-12 		Apr 2007
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000870 fadL CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001886 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000831 fadL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001060 fadL CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001687 fadL CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001190 fadL CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003120 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000960 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003197 fadL CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003895 fadL CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005985 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015394 fadL CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002883 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003820 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303445 fadL CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002633 fadL CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001199 fadL CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003181 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005360 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002400 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008875 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002290 fadL CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001982 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006886 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008226 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005606 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079026 fadL CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002700 ompP1 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003101 ompP1 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008228 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005965 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002630 fadL CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007074 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000714 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006829 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005350 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006794 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006377 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008327 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005604 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006113 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007046 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007395 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006803 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006275 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007566 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027317 fadL CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008976 fadL CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007168 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002915 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002209 fadL CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002420 fadL CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002885 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002804 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002735 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002719 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002694 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002502 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133238 fadL CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000042 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002636 fadL CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002478 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003572 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002735 fadL CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001070 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007454 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002041 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001698 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002020 fadL CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001998 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002769 fadL CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001376 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010529 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001143 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0285832 fadL CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005910 fadL CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063368 fadL CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003035 fadL CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000324 fadL CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007866 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144167 fadL CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006700 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000534 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002793 fadL CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007008 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007670 fadL CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007286 fadL CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006135 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006996 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006297 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006729 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004379 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006134 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006942 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007318 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000474 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000473 fadL CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000580 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007186 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004996 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006697 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006674 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110479 fadL CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082185 fadL CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002946 fadL CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097633 fadL CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006887 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004394 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007249 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002335 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267880 CDS
Person Approved Go view Shigella boydii 227 ADV-0002631 fadL CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008133 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005365 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002919 fadL CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073704 fadL CDS
Person Approved Go view Shigella flexneri 301 ABT-0088680 fadL CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002582 fadL CDS
Person Approved Go view Shigella sonnei 046 ADD-0002622 fadL CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003755 VCA0862 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005731 fadL CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001761 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003803 fadL CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000696 fadL CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001043 fadL CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001104 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240116 fadL CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004490 fadL CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002526 fadL CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008346 fadL CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000592 fadL CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124501 fadL CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004226 fadL CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005445 fadL CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002340 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006276 fadL CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005552 fadL CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031265 fadL CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007324 fadL CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002644 fadL CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002410 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005711 fadL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005363 fadL CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002727 fadL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003259 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001775 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017489 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002896 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20770mutantTn5 InsertionRequest the StrainABE-0007740fadLfadL::Tn5KAN-2 at position 919 in Minus orientation ,+ pKD460Blattner Laboratory
FB20771mutantTn5 InsertionRequest the StrainABE-0007740fadLfadL::Tn5KAN-2 at position 919 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2456306 to 2467646
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007720sixACDScomplement24563272456812Upstream
ABE-0007723fadJCDScomplement24570152459159Upstream
ABE-0007725fadICDScomplement24591592460469Upstream
ABE-0007731yfcZCDScomplement24606502460934Upstream
ABE-0007740fadLCDSforward24613062462646Matches
ABE-0007743yfdFCDSforward24630122464070Downstream
ABE-0007745mlaACDScomplement24642522465007Downstream
ABE-0007751yfdCCDSforward24653012466233Downstream
ABE-0007753argWtRNAforward24663092466383Downstream
ABE-0234211CPS-53 (KpLE1)prophageforward24663852476599Downstream
ABE-0285513misc_featureforward24663852476599Downstream
ABE-0007756intSCDSforward24665452467702Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.