Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007828 (frc) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007828 showshow history
Names
frc yfdW JW2371 ECK2370 b2374
Product
formyl-CoA transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2492004 2493254 1251 417
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003673 (IPR003673 CoA-transferase family III) Apr 2008
Automated Process Approved IPR017659 (IPR017659 Formyl-CoA:oxalate CoA-transferase) Jul 2018
Automated Process Approved IPR023606 (IPR023606 CoA-transferase family III domain 1 superfamily) Jul 2018
Automated Process Approved PF02515 (PF02515 CoA-transferase family III) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0033608 formyl-CoA transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017659
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003673
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name frc Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2370 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yfdW Published Annotation - Swiss-Prot Accession Number: P77407 Jan 2006
Person Approved synonym JW2371 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2374 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product formyl-CoA transferase Experimental - PubMed ID: 18245280
Reference: Escherichia coli K-12 		Mar 2009
Protein Family
Automated Process Approved protein family IPR003673 CoA-transferase family III Protein Sequence Similarity - InterPro Domain: IPR003673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR023606 CoA-transferase family III domain 1 superfamily Protein Sequence Similarity - InterPro Domain: IPR023606
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017659 Formyl-CoA:oxalate CoA-transferase Protein Sequence Similarity - InterPro Domain: IPR017659
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02515 CoA-transferase family III Protein Sequence Similarity - PFAM Model Name: PF02515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.8.3.16 Published Annotation - Swiss-Prot Accession Number: P69902 Feb 2006
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG14145 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007828 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946842 Published Annotation - Entrez Gene Database ID: 946842
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P69902 Published Annotation - Swiss-Prot Accession Number: P69902 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69902 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788717 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Oxalate catabolism Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated function catalyze the synthesis of oxalyl-CoA from formyl-CoA and oxalate Experimental - PubMed ID: 18245280
Reference: Escherichia coli K-12 		Mar 2009
Automated Process Approved note putative enzyme Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75433.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003673
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003673
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0033608 formyl-CoA transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017659
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005198 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003812 frc CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003845 frc CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003403 frc CDS
Ortholog
Person Uncurated Go view Dickeya dadantii 3937 ABF-0016186 frc CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005381 frc CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002417 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008858 frc CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002349 yfdW CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001916 frc CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006868 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008245 frc CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005536 frc pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079048 frc CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002722 frc CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003192 frc CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008247 frc CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005984 frc CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002718 frc CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007096 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005476 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006948 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005470 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006910 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006495 frc CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008446 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005490 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006233 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009326 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010355 frc CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009118 frc CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008435 frc CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007595 frc CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027348 frc CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008994 frc CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007184 frc CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002928 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002237 frc CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002452 frc CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002904 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002823 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002783 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002739 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176899 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002713 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002523 frc CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133266 frc CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003568 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002714 yfdW CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002572 frc CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007339 CDS
Person Approved Go view Shigella boydii 227 ADV-0002654 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008152 frc CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005337 frc CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002953 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073724 CDS
Person Approved Go view Shigella flexneri 301 ABT-0088701 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002605 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002699 frc CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22627mutantTn5 InsertionRequest the StrainABE-0007828frcb2374::Tn5KAN-I-SceI at position 324 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2487004 to 2498254
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007819evgSCDSforward24843742487967Downstream
ABE-0007821yfdECDScomplement24880232489168Downstream
ABE-0007824yfdVCDScomplement24892422490186Downstream
ABE-0007826oxcCDScomplement24902562491950Downstream
ABE-0007828frcCDScomplement24920042493254Matches
ABE-0007835yfdXCDScomplement24937672494402Upstream
ABE-0007839ypdICDSforward24946982494973Upstream
ABE-0007841yfdYCDScomplement24950502495292Upstream
ABE-0007848lpxPCDSforward24956452496565Upstream
ABE-0285223ypdKCDSforward24969212496992Upstream
ABE-0007850alaCCDScomplement24970572498295Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.