Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007850 (alaC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007850 showshow history
Names
alaC yfdZ JW2376 ECK2375 b2379
Product
glutamate-pyruvate aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2497057 2498295 1239 413
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000872
EnteroFam0007850: Trusted threshold=1227.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR004839 (IPR004839 Aminotransferase, class I/classII) Apr 2008
Automated Process Approved PF00155 (PF00155 Aminotransferase class I and II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name alaC Experimental - PubMed ID: 20729367
Reference: Escherichia coli K-12 		Jan 2011
Person Approved synonym ECK2375 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2376 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yfdZ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved locus tag b2379 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glutamate-pyruvate aminotransferase Experimental - PubMed ID: 20729367
Reference: Escherichia coli K-12 		Jan 2011
Automated Process Approved alternate product name valine-pyruvate aminotransferase 3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0007850: Trusted threshold=1227.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000872
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00155 Aminotransferase class I and II Protein Sequence Similarity - PFAM Model Name: PF00155
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004839 Aminotransferase, class I/classII Protein Sequence Similarity - InterPro Domain: IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 2.6.1.2 Published Annotation - Web Resource URL: http://BioCyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G7242
Reference: Escherichia coli K-12 		Jan 2011
Person Uncurated MultiFun 3.1.4 (regulation; type of regulation; regulation level unknown) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007850 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946850 Published Annotation - Entrez Gene Database ID: 946850
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788722 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77434 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77434 Published Annotation - Swiss-Prot Accession Number: P77434 Jan 2006
Automated Process Approved db xref EcoGene:EG14198 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Amino acid biosynthesis: Alanine Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative aminotransferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75438.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000872 alaC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000987 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001740 alaC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001988 alaC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002102 alaC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002083 alaC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001641 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001402 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003155 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000930 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003219 dapL CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003909 dapL CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005926 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018221 alaC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002922 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003857 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303523 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002660 yfdZ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001170 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003160 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009579 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002423 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008852 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002353 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001912 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006860 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008251 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005530 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079054 alaC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002727 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003198 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008253 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005990 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002723 yfdZ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007102 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005483 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006953 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005475 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006915 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006500 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008451 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005485 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006238 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009331 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010360 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009123 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008440 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007600 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027353 yfdZ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008999 alaC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007189 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002934 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002242 yfdZ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002457 yfdZ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002911 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002830 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002790 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002744 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002718 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002530 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133271 yfdZ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003575 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002719 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002513 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003871 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002744 yfdZ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001091 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006089 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002104 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001672 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002059 yfdZ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001948 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002814 yfdZ CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001329 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010553 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001115 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287949 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005934 yfdZ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063403 yfdZ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001792 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000800 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000360 yfdZ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007925 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005136 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006713 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000514 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002808 yfdZ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007026 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007729 yfdZ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007341 yfdZ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006121 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007021 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006322 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006742 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004392 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006146 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006955 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007304 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000458 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000458 yfdZ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000565 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007200 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004981 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006710 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006686 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110521 yfdZ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082167 yfdZ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002958 yfdZ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097664 yfdZ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006873 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004379 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007263 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002297 CDS
Person Approved Go view Shigella boydii 227 ADV-0002659 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008157 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005331 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002958 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073729 yfdZ CDS
Person Approved Go view Shigella flexneri 301 ABT-0088705 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002609 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002704 yfdZ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001800 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003670 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000747 dapL CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001097 yfdZ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002500 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240553 yfdZ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006841 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002611 yfdZ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006220 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000534 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125256 yfdZ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007681 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007142 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008633 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005621 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031192 yfdZ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007046 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001698 yfdZ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002496 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005640 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005299 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002787 yfdZ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003341 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001694 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017521 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002888 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2492057 to 2503295
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007828frcCDScomplement24920042493254Downstream
ABE-0007835yfdXCDScomplement24937672494402Downstream
ABE-0007839ypdICDSforward24946982494973Downstream
ABE-0007841yfdYCDScomplement24950502495292Downstream
ABE-0007848lpxPCDSforward24956452496565Downstream
ABE-0285223ypdKCDSforward24969212496992Downstream
ABE-0007850alaCCDScomplement24970572498295Matches
ABE-0007855pyrSCDSforward24986712500368Upstream
ABE-0007857pyrRCDSforward25003832501117Upstream
ABE-0007859ypdCCDSforward25011302501987Upstream
ABE-0007861fryACDScomplement25019902504485Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.