Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007875 (glk) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007875 showshow history
Names
glk JW2385 ECK2384 b2388
Product
glucokinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2508461 2509426 966 322
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000873
EnteroFam0007875: Trusted threshold=834.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003836 (IPR003836 Glucokinase) Apr 2008
Automated Process Approved PF02685 (PF02685 Glucokinase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0051156 glucose 6-phosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003836
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0005536 glucose binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003836
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004340 glucokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name glk Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2385 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2384 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2388 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glucokinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name glucokinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007875: Trusted threshold=834.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000873
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02685 Glucokinase Protein Sequence Similarity - PFAM Model Name: PF02685
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003836 Glucokinase Protein Sequence Similarity - InterPro Domain: IPR003836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.1.2 Published Annotation - Swiss-Prot Accession Number: P0A6V8 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12957 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6V8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007875 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A6V8 Published Annotation - Swiss-Prot Accession Number: P0A6V8 Jan 2006
Automated Process Approved db xref GeneID:946858 Published Annotation - Entrez Gene Database ID: 946858
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788732 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75447.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0051156 glucose 6-phosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003836
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004340 glucokinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0005536 glucose binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003836
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000873 glk CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001771 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001484 glk CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001860 glk CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001802 glk CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001970 glk CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003598 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001842 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003160 glk CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000926 glk CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003225 glk CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003919 glk CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004406 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016169 glk CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0004221 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003860 glk CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303526 glk CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002662 glk CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001165 glk CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003148 glk CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009534 glk CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002432 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008843 glk CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002362 glk CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001903 glk CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006849 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008260 glk CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005521 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079065 glk CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002737 glk CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003208 glk CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008263 glk CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006000 glk CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002732 glk CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007112 glk CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005492 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006962 glk CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005484 glk CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006925 glk CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006509 glk CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008460 glk CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005476 glk CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006247 glk CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009340 glk CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010370 glk CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009133 glk CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008449 glk CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007609 glk CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027362 glk CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009008 glk CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007198 glk CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002943 glk CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002251 glk CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002466 glk CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002920 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002839 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002799 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002754 glk CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176918 glk CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002727 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002539 glk CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133280 glk CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003584 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002728 glk CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002517 glk CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002090 glk CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002747 glk CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001094 glk CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004381 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002109 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001668 glk CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002063 glk CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001944 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002818 glk CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001325 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010557 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001111 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0287953 glk CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005938 glk CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061655 glk CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000806 glk CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001568 glk CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004135 glk CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139957 glk CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001318 glk CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006714 glk CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000507 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002811 glk CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007027 glk CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007731 glk CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007343 glk CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006120 glk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007023 glk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006324 glk CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006750 glk CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004394 glk CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006148 glk CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006957 glk CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007303 glk CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000457 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000457 glk CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000563 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007202 glk CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004979 glk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006712 glk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006688 glk CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110524 glk CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082166 glk CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002960 glk CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097667 glk CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006872 glk CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004377 glk CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007265 glk CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002290 glk CDS
Person Approved Go view Shigella boydii 227 ADV-0002668 glk CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008166 glk CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005318 glk CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002968 glk CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073738 glk CDS
Person Approved Go view Shigella flexneri 301 ABT-0088711 glk CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002618 glk CDS
Person Approved Go view Shigella sonnei 046 ADD-0002715 glk CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006997 glk CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003558 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003657 glk CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000754 glk CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001103 glk CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002494 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240555 glk CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006843 glk CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002613 glk CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006222 glk CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000532 glk CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125260 glk CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007679 glk CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007140 glk CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003193 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008635 glk CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005623 glk CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031190 glk CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007044 glk CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001696 glk CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002498 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005638 glk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005297 glk CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002789 glk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003343 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001692 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017544 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002885 glk CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20780mutantTn5 InsertionRequest the StrainABE-0007875glkglk::Tn5KAN-2 at position 161 in Minus orientation ,- pKD460Blattner Laboratory
FB20781mutantTn5 InsertionRequest the StrainABE-0007875glkglk::Tn5KAN-2 at position 161 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2503461 to 2514426
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007861fryACDScomplement25019902504485Downstream
ABE-0007864ypdECDScomplement25045102505547Downstream
ABE-0007869ypdFCDScomplement25055472506632Downstream
ABE-0007871fryCCDScomplement25066472507894Downstream
ABE-0007873fryBCDScomplement25079162508242Downstream
ABE-0007875glkCDScomplement25084612509426Matches
ABE-0007880yfeOCDSforward25096302510886Upstream
ABE-0007883ypeCCDSforward25110012511327Upstream
ABE-0285514repeat_regionforward25113522511439Upstream
ABE-0007889mntHCDScomplement25114682512706Upstream
ABE-0285845ypeDCDScomplement25126872512776Upstream
ABE-0007893nupCCDSforward25130422514244Upstream
ABE-0007895mobile_elementforward25142732515617Upstream
ABE-0007897insL-3CDSforward25143312515443Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.