Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007889 (mntH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007889 showshow history
Names
mntH yfeP mntA JW2388 ECK2387 b2392
Product
proton-dependent divalent metal cation transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2511468 2512706 1239 413
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000874
EnteroFam0007889: Trusted threshold=1054.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001046 (IPR001046 NRAMP family) Apr 2008
Automated Process Approved PF01566 (PF01566 Natural resistance-associated macrophage protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0030001 metal ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001046
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001046
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001046
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0046873 metal ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001046
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001046
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name mntH Published Annotation - PubMed ID: 10712688
Reference: Escherichia coli K-12 		Apr 2008
Person Approved synonym ECK2387 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yfeP Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym mntA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2388 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2392 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product proton-dependent divalent metal cation transporter Experimental - PubMed ID: 10712688
Reference: Escherichia coli K-12 		Apr 2008
Person Approved alternate product name manganese/divalent cation transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name manganese/divalent cation transport protein (NRAMP family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007889: Trusted threshold=1054.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000874
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF01566 Natural resistance-associated macrophage protein Protein Sequence Similarity - PFAM Model Name: PF01566
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001046 NRAMP family Protein Sequence Similarity - InterPro Domain: IPR001046
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 5.6.2 (cell processes; protection; detoxification (xenobiotic metabolism)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.55 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Manganese (Nramp) Fam.) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.123 (transport; substrate; Mn+/H+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG14157 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007889 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A769 Published Annotation - Swiss-Prot Accession Number: P0A769 Jan 2006
Automated Process Approved db xref GeneID:946899 Published Annotation - Entrez Gene Database ID: 946899
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788736 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A769 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated function proton-dependent uptake of divalent metal cations with a preference for manganese (Mn(II)) and including Cd(II), Co(II), Fe(II), Zn(II), Ni(II), and Cu(II) Experimental - PubMed ID: 10712688
Reference: Escherichia coli K-12 		Apr 2008
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006805 - xenobiotic metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75451.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001046
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0030001 metal ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001046
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001046
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001046
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0046873 metal ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001046
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000874 mntH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000915 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001480 mntH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001639 mntH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001987 mntH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001761 mntH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000226 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002868 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003165 mntH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000919 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003234 mntH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003924 mntH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008343 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0046935 mntH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000814 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003865 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303538 mntH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002666 mntH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001162 mntH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003144 mntH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009537 mntH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002435 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008840 mntH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002365 mntH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001900 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006844 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008263 mntH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005518 MntH CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079069 mntH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002740 mntH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003211 mntH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008266 mntH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006003 mntH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002735 mntH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007116 mntH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005495 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006965 mntH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005487 mntH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006928 mntH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009546 mntH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008463 mntH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005473 mntH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006250 mntH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009343 mntH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010373 mntH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009136 mntH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008453 mntH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007612 mntH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027366 mntH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009011 mntH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007202 mntH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002947 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002254 mntH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002469 mntH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002923 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002842 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002802 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002757 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176921 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002730 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002542 mntH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133283 mntH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003587 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002732 mntH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000007 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002082 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002752 mntH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001099 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008187 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002113 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001664 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002068 mntH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001939 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002823 mntH CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001320 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010561 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001107 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287960 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005942 mntH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061079 mntH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003307 mntH CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003546 mntH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001295 mntH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005321 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002544 mntH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006719 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000502 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002816 mntH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007033 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007748 mntH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007360 mntH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006114 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007028 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006329 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006756 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004399 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006153 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006962 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007298 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000452 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000452 mntH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000557 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007208 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004974 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006718 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006693 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110538 mntH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082161 mntH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002966 mntH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097682 mntH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006867 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004371 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007271 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002281 CDS
Person Approved Go view Shigella boydii 227 ADV-0002671 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008169 mntH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005313 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002969 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073743 mntH CDS
Person Approved Go view Shigella flexneri 301 ABT-0088714 mntH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002621 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002719 mntH CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000139 mntH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003563 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003640 mntH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000759 mntH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001108 mntH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002488 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240564 mntH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002619 mntH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006227 mtnH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000527 mntH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125272 mntH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007674 mtnH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007134 mtnH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003196 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008641 mtnH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005629 mtnH CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031185 mntH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007038 mtnH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001690 mntH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002504 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005632 mtnH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005292 mtnH CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002794 mntH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003349 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001686 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017570 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002880 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22632mutantTn5 InsertionRequest the StrainABE-0007889mntHb2392::Tn5KAN-I-SceI at position 484 in Plus orientation ,+ pKD465Blattner Laboratory
FB23446mutantTn5 InsertionRequest the StrainABE-0007889mntHb2392::Tn5KAN-I-SceI at position 484 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2506468 to 2517706
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007869ypdFCDScomplement25055472506632Downstream
ABE-0007871fryCCDScomplement25066472507894Downstream
ABE-0007873fryBCDScomplement25079162508242Downstream
ABE-0007875glkCDScomplement25084612509426Downstream
ABE-0007880yfeOCDSforward25096302510886Downstream
ABE-0007883ypeCCDSforward25110012511327Downstream
ABE-0285514repeat_regionforward25113522511439Downstream
ABE-0007889mntHCDScomplement25114682512706Matches
ABE-0285845ypeDCDScomplement25126872512776Overlaps Upstream
ABE-0007893nupCCDSforward25130422514244Upstream
ABE-0007895mobile_elementforward25142732515617Upstream
ABE-0007897insL-3CDSforward25143312515443Upstream
ABE-0007899pdeACDScomplement25156432517832Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.