Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007893 (nupC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007893 showshow history
Names
nupC JW2389 ECK2388 cru b2393
Product
nucleoside:H+ symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2513042 2514244 1203 401
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008276 (IPR008276 Concentrative nucleoside transporter) Apr 2008
Automated Process Approved IPR002668 (IPR002668 Concentrative nucleoside transporter N-terminal domain) Apr 2008
Automated Process Approved IPR011642 (IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain) Apr 2008
Automated Process Approved IPR011657 (IPR011657 Concentrative nucleoside transporter C-terminal domain) Apr 2008
Automated Process Approved IPR018270 (IPR018270 Concentrative nucleoside transporter, metazoan/bacterial) Jul 2018
Automated Process Approved PF07670 (PF07670 Nucleoside recognition) Jul 2018
Automated Process Approved PF07662 (PF07662 Na+ dependent nucleoside transporter C-terminus) Jul 2018
Automated Process Approved PF01773 (PF01773 Na+ dependent nucleoside transporter N-terminus) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:1901642 nucleoside transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018270, IPR008276
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008276
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008276
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0005337 nucleoside transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018270, IPR008276
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005415 nucleoside:sodium symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008276
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0001882 nucleoside binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011642
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nupC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2388 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2389 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym cru Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b2393 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product nucleoside:H+ symporter Published Annotation - EcoCyc Accession Number: EG11971
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name nucleoside (except guanosine) transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name nucleoside transport protein (NUP family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name permease of transport system for 3 nucleosides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR018270 Concentrative nucleoside transporter, metazoan/bacterial Protein Sequence Similarity - InterPro Domain: IPR018270
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF07662 Na+ dependent nucleoside transporter C-terminus Protein Sequence Similarity - PFAM Model Name: PF07662
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01773 Na+ dependent nucleoside transporter N-terminus Protein Sequence Similarity - PFAM Model Name: PF01773
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011657 Concentrative nucleoside transporter C-terminal domain Protein Sequence Similarity - InterPro Domain: IPR011657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002668 Concentrative nucleoside transporter N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR002668
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Protein Sequence Similarity - InterPro Domain: IPR011642
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008276 Concentrative nucleoside transporter Protein Sequence Similarity - InterPro Domain: IPR008276
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07670 Nucleoside recognition Protein Sequence Similarity - PFAM Model Name: PF07670
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.146 (transport; substrate; nucleoside) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.41 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Concentrative Nucleoside Transporter (CNT) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AFF2 Published Annotation - Swiss-Prot Accession Number: P0AFF2 Jan 2006
Automated Process Approved db xref GI:1788737 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946895 Published Annotation - Entrez Gene Database ID: 946895
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFF2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11971 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007893 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Nucleosides, purines, pyrimidines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note permease of transport system for 3 nucleosides; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75452.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:1901642 nucleoside transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018270, IPR008276
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008276
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008276
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0005337 nucleoside transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR018270, IPR008276
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0001882 nucleoside binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011642
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005415 nucleoside:sodium symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008276
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001001 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001479 nupC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001509 nupC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000037 nupC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000116 nupC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002322 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001448 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003166 nupC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000918 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003235 nupC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003925 nupC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005818 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018817 nupC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003054 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003866 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303541 nupC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002667 nupC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001161 nupC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003143 nupC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009538 nupC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002436 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008839 nupC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002366 nupC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001899 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006843 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008264 nupC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005517 nupC pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079070 nupC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002741 nupC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003212 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008267 nupC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006004 nupC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002736 nupC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007117 nupC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005496 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006966 nupC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005488 nupC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006929 nupC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009547 nupC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008464 nupC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005472 nupC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006251 nupC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009344 nupC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010374 nupC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008454 nupC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007613 nupC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027367 nupC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009012 nupC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007203 nupC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002948 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002255 nupC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002470 nupC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002924 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002843 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002803 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002758 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176922 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002731 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002543 nupC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133284 nupC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003588 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002733 nupC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002525 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002081 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002753 nupC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001100 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007572 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002114 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001663 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002069 nupC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001938 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002824 nupC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001319 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010562 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001106 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287961 nupC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005943 nupc1 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063471 nupC1 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001810 nupC1 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001985 nupC1 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000449 nupC1 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008042 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139936 nupC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006720 nupC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000501 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002817 nupC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007034 nupC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007751 nupC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007363 nupC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006113 nupC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007029 nupC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006331 nupC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006757 nupC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004400 nupC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006154 nupC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006963 nupC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007297 nupC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000555 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007209 nupC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004973 nupC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006719 nupC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006694 nupC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110542 nupC CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082160 nupC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002967 nupC CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097690 nupC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006866 nupC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004370 nupC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007273 nupC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002280 CDS
Person Approved Go view Shigella boydii 227 ADV-0002672 nupC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008170 nupC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005311 nupC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002977 nupC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073744 nupC CDS
Person Approved Go view Shigella flexneri 301 ABT-0088715 nupC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002622 nupC CDS
Person Approved Go view Shigella sonnei 046 ADD-0002720 nupC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005760 nupC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003564 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003637 cru CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000761 cru_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001109 nupC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002487 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240576 nupC1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002620 nupC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006228 nupC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000526 nupC CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125285 nupC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007673 nupC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007133 nupC CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008642 nupC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005630 nupC CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031184 nupC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007037 nupC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001689 nupC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002505 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005631 nupC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005291 nupC CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002795 nupC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003350 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001685 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017573 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002879 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2508042 to 2519244
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007873fryBCDScomplement25079162508242Upstream
ABE-0007875glkCDScomplement25084612509426Upstream
ABE-0007880yfeOCDSforward25096302510886Upstream
ABE-0007883ypeCCDSforward25110012511327Upstream
ABE-0285514repeat_regionforward25113522511439Upstream
ABE-0007889mntHCDScomplement25114682512706Upstream
ABE-0285845ypeDCDScomplement25126872512776Upstream
ABE-0007893nupCCDSforward25130422514244Matches
ABE-0007895mobile_elementforward25142732515617Downstream
ABE-0007897insL-3CDSforward25143312515443Downstream
ABE-0007899pdeACDScomplement25156432517832Downstream
ABE-0007902alaXtRNAcomplement25180412518116Downstream
ABE-0007904alaWtRNAcomplement25181562518231Downstream
ABE-0007907yfeCCDSforward25184672518811Downstream
ABE-0007909yfeDCDSforward25188132519205Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.