Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007911 (gltX) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007911 showshow history
Names
gltX JW2395 ECK2394 b2400
Product
glutamyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2519257 2520672 1416 472
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000875
EnteroFam0007911: Trusted threshold=1329.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000924 (IPR000924 Glutamyl/glutaminyl-tRNA synthetase) Apr 2008
Automated Process Approved IPR004527 (IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial) Apr 2008
Automated Process Approved IPR008925 (IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site) Apr 2008
Automated Process Approved IPR020058 (IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain) Jul 2018
Automated Process Approved PF00749 (PF00749 tRNA synthetases class I (E and Q), catalytic domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0043039 tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020058
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006424 glutamyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008925
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004527
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0017101 aminoacyl-tRNA synthetase multienzyme complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008925
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0000049 tRNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR008925
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004527
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004818 glutamate-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008925
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name gltX Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2395 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2394 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2400 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glutamyl-tRNA synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name glutamate tRNA synthetase, catalytic subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007911: Trusted threshold=1329.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000875
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00749 tRNA synthetases class I (E and Q), catalytic domain Protein Sequence Similarity - PFAM Model Name: PF00749
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR008925
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Protein Sequence Similarity - InterPro Domain: IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000924 Glutamyl/glutaminyl-tRNA synthetase Protein Sequence Similarity - InterPro Domain: IPR000924
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial Protein Sequence Similarity - InterPro Domain: IPR004527
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR020058
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 6.1.1.17 Published Annotation - Swiss-Prot Accession Number: P04805 Feb 2006
Automated Process Uncurated EC number 6.1.1.- Published Annotation - Database Name: EC2GO: GO:0004812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.3.12 (metabolism; building block biosynthesis; cofactor, small molecule carrier; heme, porphyrine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007911 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P04805 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10407 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946906 Published Annotation - Entrez Gene Database ID: 946906
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788743 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P04805 Published Annotation - Swiss-Prot Accession Number: P04805 Jan 2005
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note glutamate tRNA synthetase, catalytic subunit; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75457.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0043039 tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR020058
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006424 glutamyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008925
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0017101 aminoacyl-tRNA synthetase multienzyme complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008925
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004527
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004527
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000049 tRNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR008925
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004818 glutamate-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008925
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000924
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000875 gltX CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000378 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000881 gltX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000603 gltX CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000198 gltX CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000447 gltX CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002203 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000964 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129340 gltX CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104791 gltX CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104177 gltX CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003170 gltX CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000913 gltX CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003241 gltX CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003930 gltX CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005643 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019859 gltX CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003179 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303556 gltX CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002671 gltX CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001156 gltX CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003131 gltX CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002442 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008832 gltX CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002370 gltX CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001895 gltX CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006836 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005511 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079076 gltX CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002748 gltX CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003218 gltX CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006010 gltX CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002742 gltX CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007123 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005502 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006974 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005496 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010948 gltX CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008472 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005464 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006259 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010382 gltX CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007621 gltX CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027374 gltX CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009019 gltX CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007210 gltX CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002952 gltX CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002260 gltX CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002477 gltX CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002932 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002847 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002810 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002764 gltX CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002737 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002551 gltX CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133293 gltX CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003595 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002739 gltX CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002527 gltX CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002078 gltX CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002759 gltX CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001104 gltX CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007689 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002119 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001658 gltX CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002076 gltX CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001933 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002830 gltX CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001313 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010569 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001103 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288328 gltX CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005948 gltX CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063582 gltX CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001882 gltX CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002033 gltX CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004291 gltX CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008185 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139942 gltX CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002206 gltX CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006726 gltX CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000492 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002825 gltX CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007040 gltX CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007768 gltX CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007379 gltX CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006106 gltX CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007035 gltX CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006337 gltX CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008742 gltX CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006160 gltX CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006969 gltX CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007291 gltX CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000446 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000446 gltX CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000549 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007215 gltX CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004967 gltX CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006725 gltX CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110550 gltX CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082154 gltX CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002973 gltX CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097699 gltX CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006860 gltX CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004364 gltX CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007279 gltX CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002278 gltX CDS
Person Approved Go view Shigella boydii 227 ADV-0002681 gltX CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008188 gltX CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0002984 gltX CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073751 gltX CDS
Person Approved Go view Shigella flexneri 301 ABT-0088720 gltX CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002627 gltX CDS
Person Approved Go view Shigella sonnei 046 ADD-0002726 gltX CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002412 gltX CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002306 VC2214 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000280 gltX CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005753 gltX CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002924 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003628 gltX CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001431 gltX CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001110 gltX CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002819 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240591 gltX CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006854 gltX CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002624 gltX CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006233 gltX CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000525 gltX CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125301 gltX CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007668 gltX CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007128 gltX CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009860 gltX CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005635 gltX CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031179 gltX CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007032 gltX CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001684 gltX CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002511 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005627 gltX CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005286 gltX CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002800 gltX CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003355 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001680 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017587 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002875 gltX CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2514257 to 2525672
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007895mobile_elementforward25142732515617Downstream
ABE-0007897insL-3CDSforward25143312515443Downstream
ABE-0007899pdeACDScomplement25156432517832Downstream
ABE-0007902alaXtRNAcomplement25180412518116Downstream
ABE-0007904alaWtRNAcomplement25181562518231Downstream
ABE-0007907yfeCCDSforward25184672518811Downstream
ABE-0007909yfeDCDSforward25188132519205Downstream
ABE-0007911gltXCDScomplement25192572520672Matches
ABE-0007914valUtRNAforward25209312521006Upstream
ABE-0007916valXtRNAforward25210512521126Upstream
ABE-0007918valYtRNAforward25211732521248Upstream
ABE-0007920lysVtRNAforward25212532521328Upstream
ABE-0285515repeat_regionforward25215382521566Upstream
ABE-0007922xapRCDScomplement25215932522477Upstream
ABE-0007925xapBCDScomplement25227292523985Upstream
ABE-0007927xapACDScomplement25240452524878Upstream
ABE-0007930yfeNCDSforward25251272525891Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.