Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007938 (ligA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007938 showshow history
Names
ligA JW2403 lop ECK2406 pdeC dnaL lig b2411
Product
NAD-dependent DNA ligase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2528161 2530176 2016 672
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000877
EnteroFam0007938: Trusted threshold=1802.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003583 (IPR003583 Helix-hairpin-helix DNA-binding motif, class 1) Apr 2008
Automated Process Approved IPR001679 (IPR001679 NAD-dependent DNA ligase) Apr 2008
Automated Process Approved IPR001357 (IPR001357 BRCT domain) Apr 2008
Automated Process Approved IPR004150 (IPR004150 NAD-dependent DNA ligase, OB-fold) Apr 2008
Automated Process Approved IPR010994 (IPR010994 RuvA domain 2-like) Apr 2008
Automated Process Approved IPR013839 (IPR013839 NAD-dependent DNA ligase, adenylation) Apr 2008
Automated Process Approved IPR013840 (IPR013840 NAD-dependent DNA ligase, N-terminal) Apr 2008
Automated Process Approved IPR004149 (IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type) Apr 2008
Automated Process Approved IPR012340 (IPR012340 Nucleic acid-binding, OB-fold) Apr 2008
Automated Process Approved IPR000445 (IPR000445 Helix-hairpin-helix motif) Apr 2008
Automated Process Approved IPR036420 (IPR036420 BRCT domain superfamily) Jul 2018
Automated Process Approved PF03119 (PF03119 NAD-dependent DNA ligase C4 zinc finger domain) Jul 2018
Automated Process Approved PF12826 (PF12826 Helix-hairpin-helix motif) Jul 2018
Automated Process Approved PF00533 (PF00533 BRCA1 C Terminus (BRCT) domain) Jul 2018
Automated Process Approved PF03120 (PF03120 NAD-dependent DNA ligase OB-fold domain) Jul 2018
Automated Process Approved PF14520 (PF14520 Helix-hairpin-helix domain) Jul 2018
Automated Process Approved PF01653 (PF01653 NAD-dependent DNA ligase adenylation domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006281 DNA repair Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006260 DNA replication GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004149, IPR004150, IPR001679
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003583
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003911 DNA ligase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004149, IPR004150, IPR013839, IPR001679, IPR013840
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0043565 sequence-specific DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003583
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003677 DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000445
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ligA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym lig Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym dnaL Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2406 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2403 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym pdeC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Automated Process Approved synonym lop Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2411 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NAD-dependent DNA ligase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2022
Person Approved alternate product name DNA ligase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007938: Trusted threshold=1802.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000877
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013839 NAD-dependent DNA ligase, adenylation Protein Sequence Similarity - InterPro Domain: IPR013839
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010994 RuvA domain 2-like Protein Sequence Similarity - InterPro Domain: IPR010994
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001357 BRCT domain Protein Sequence Similarity - InterPro Domain: IPR001357
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 Protein Sequence Similarity - InterPro Domain: IPR003583
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001679 NAD-dependent DNA ligase Protein Sequence Similarity - InterPro Domain: IPR001679
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013840 NAD-dependent DNA ligase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013840
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004150 NAD-dependent DNA ligase, OB-fold Protein Sequence Similarity - InterPro Domain: IPR004150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012340 Nucleic acid-binding, OB-fold Protein Sequence Similarity - InterPro Domain: IPR012340
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03120 NAD-dependent DNA ligase OB-fold domain Protein Sequence Similarity - PFAM Model Name: PF03120
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00533 BRCA1 C Terminus (BRCT) domain Protein Sequence Similarity - PFAM Model Name: PF00533
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF12826 Helix-hairpin-helix motif Protein Sequence Similarity - PFAM Model Name: PF12826
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF14520 Helix-hairpin-helix domain Protein Sequence Similarity - PFAM Model Name: PF14520
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type Protein Sequence Similarity - InterPro Domain: IPR004149
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036420 BRCT domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036420
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000445 Helix-hairpin-helix motif Protein Sequence Similarity - InterPro Domain: IPR000445
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01653 NAD-dependent DNA ligase adenylation domain Protein Sequence Similarity - PFAM Model Name: PF01653
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03119 NAD-dependent DNA ligase C4 zinc finger domain Protein Sequence Similarity - PFAM Model Name: PF03119
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 6.5.1.2 Published Annotation - Swiss-Prot Accession Number: P15042 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.1.4 (information transfer; DNA related; DNA repair) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007938 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10534 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946885 Published Annotation - Entrez Gene Database ID: 946885
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P15042 Published Annotation - Swiss-Prot Accession Number: P15042 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P15042 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788750 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; DNA - replication, repair, restriction/modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of recE ASAP:4531:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note DNA ligase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006281 - DNA repair Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75464.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006281 DNA repair Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006260 DNA replication GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004149, IPR004150, IPR001679
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003583
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0043565 sequence-specific DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003583
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003911 DNA ligase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004149, IPR004150, IPR013839, IPR001679, IPR013840
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003677 DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000445
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000877 ligA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001794 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001163 ligA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000647 ligA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000586 ligA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000982 ligA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003272 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129337 lig CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104788 lig CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003176 ligA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000908 ligA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003259 ligA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003942 ligA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005329 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014835 ligA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003428 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003875 ligA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303578 ligA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002676 lig CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001148 lig CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003118 ligA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002455 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008815 ligA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002376 ligA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001885 ligA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006826 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010395 ligA CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010605 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079089 ligA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002758 ligA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003232 ligA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010831 ligA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002754 ligA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007132 ligA CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006984 ligA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005506 ligA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004979 ligA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008482 ligA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007930 ligA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027385 ligA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009948 ligA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007219 ligA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002961 ligA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002267 ligA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002489 ligA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003174 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002857 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002965 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002777 ligA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002750 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002565 ligA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133302 ligA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003601 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002751 lig CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002533 ligA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002068 ligA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002767 ligA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001109 ligA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005329 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002124 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003488 ligA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002085 ligA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001927 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002839 ligA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001304 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010574 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001098 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290937 ligA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005957 lig CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063897 ligA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004180 ligA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003653 ligA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004021 ligA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008570 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139933 ligA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003714 ligA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006739 ligA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000480 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002837 ligA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007053 ligA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007799 lig CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007405 lig CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006093 ligA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007048 ligA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006930 ligA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007133 ligA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006397 ligA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006172 ligA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006982 ligA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008155 ligA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000438 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000438 ligA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000535 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007228 ligA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004954 ligA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006738 ligA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008097 ligA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110574 ligA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082142 ligA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002987 ligA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097727 ligA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006847 ligA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004349 ligA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006027 ligA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002260 ligA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266506 ligA CDS
Person Approved Go view Shigella boydii 227 ADV-0002690 ligA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002992 ligA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073758 ligA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088727 ligA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002635 lig CDS
Person Approved Go view Shigella sonnei 046 ADD-0002735 ligA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001039 VC0971 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000614 ligA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005762 ligA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002929 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003614 dnaL CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001436 ligA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001114 ligA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002814 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240597 ligA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006859 ligA1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002631 ligA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006240 ligA1 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000520 ligA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125312 ligA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007661 ligA1 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007122 ligA1 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003454 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009853 ligA1 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005642 ligA1 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031170 ligA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007025 ligA1 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001676 ligA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002518 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005621 ligA1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005280 ligA1 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002806 ligA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003362 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001673 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017609 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001837 ligA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2523161 to 2535176
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007925xapBCDScomplement25227292523985Downstream
ABE-0007927xapACDScomplement25240452524878Downstream
ABE-0007930yfeNCDSforward25251272525891Downstream
ABE-0007932yfeRCDScomplement25259302526856Downstream
ABE-0007936yfeHCDSforward25269462527944Downstream
ABE-0285067ypeBCDScomplement25279412528159Downstream
ABE-0007938ligACDScomplement25281612530176Matches
ABE-0007942zipACDScomplement25302472531233Upstream
ABE-0007953cysZCDSforward25314632532224Upstream
ABE-0007957cysKCDSforward25324092533380Upstream
ABE-0007962ptsHCDSforward25337642534021Upstream
ABE-0007967ptsICDSforward25340662535793Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.