Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007957 (cysK) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007957 showshow history
Names
cysK JW2407 ECK2409 cysZ b2414
Product
cysteine synthase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2532409 2533380 972 324
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000880
EnteroFam0007957: Trusted threshold=930.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005856 (IPR005856 Cysteine synthase) Apr 2008
Automated Process Approved IPR005859 (IPR005859 Cysteine synthase CysK) Apr 2008
Automated Process Approved IPR001216 (IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site) Apr 2008
Automated Process Approved IPR001926 (IPR001926 Pyridoxal-phosphate dependent enzyme) Apr 2008
Automated Process Approved IPR036052 (IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme) Jul 2018
Automated Process Approved PF00291 (PF00291 Pyridoxal-phosphate dependent enzyme) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0019344 cysteine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006535 cysteine biosynthetic process from serine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004124 cysteine synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cysK Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym cysZ Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW2407 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2409 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2414 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product cysteine synthase A Published Annotation - EcoCyc Accession Number: EG10192
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name cysteine synthase A, O-acetylserine sulfhydrolase A Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name subunit of cysteine synthase A and O-acetylserine sulfhydrolase A, PLP-dependent enzyme Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name cysteine synthase A, O-acetylserine sulfhydrolase A subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007957: Trusted threshold=930.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000880
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005859 Cysteine synthase CysK Protein Sequence Similarity - InterPro Domain: IPR005859
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site Protein Sequence Similarity - InterPro Domain: IPR001216
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005856 Cysteine synthase Protein Sequence Similarity - InterPro Domain: IPR005856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00291 Pyridoxal-phosphate dependent enzyme Protein Sequence Similarity - PFAM Model Name: PF00291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001926 Pyridoxal-phosphate dependent enzyme Protein Sequence Similarity - InterPro Domain: IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Protein Sequence Similarity - InterPro Domain: IPR036052
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.5.1.47 Published Annotation - Swiss-Prot Accession Number: P0ABK5 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.12 (metabolism; building block biosynthesis; amino acids; cysteine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946877 Published Annotation - Entrez Gene Database ID: 946877
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0ABK5 Published Annotation - Swiss-Prot Accession Number: P0ABK5 Jan 2006
Automated Process Approved db xref GI:1788754 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABK5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007957 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10192 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Cysteine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note cysteine synthase A, O-acetylserine sulfhydrolase A; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0019344 - cysteine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75467.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation expression regulated by acetate; expression is reduced by acetate Experimental - PubMed ID: 11244055
Reference: Escherichia coli ATCC43888 (EHEC) 		Nov 2005
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006535 cysteine biosynthetic process from serine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0019344 cysteine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004124 cysteine synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000880 cysK CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000902 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001293 cysK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001111 cysK CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000587 cysK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001007 cysK CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000210 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002849 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129336 cysK CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104173 cysK CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003180 cysK CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000905 cysK CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003262 cysK CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003945 cysK_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008313 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016787 cysK CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000858 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303593 cysK CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002679 cysK CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001145 cysK CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003114 cysK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006843 cysK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002458 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008812 cysK CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002379 cysK CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001882 cysK CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006822 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010736 cysK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009464 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079092 cysK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002761 cysK CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003235 cysK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009927 cysK CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002757 cysK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007135 cysK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001067 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006987 cysK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005509 cysK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004982 cysK CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008485 cysK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006277 cysK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010979 cysK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007933 cysK CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027388 cysK CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0010132 cysK CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007222 cysK CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002964 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002270 cysK CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002492 cysK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003171 cysK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002860 cysK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002962 cysK CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002780 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002753 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002568 cysK CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133305 cysK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003604 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002755 cysK CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002536 cysK CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002065 cysK CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002770 cysK CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001113 cysK CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008161 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002127 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003491 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002088 cysK CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001924 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002842 cysK CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001301 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010577 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001095 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290934 cysK CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005960 cysK CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061129 cysK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000498 cysK CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000220 cysK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001347 cysK CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005375 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139925 cysK CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003968 cysK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006742 cysK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000476 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002841 cysK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007056 cysK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007814 cysK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007420 cysK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006090 cysK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007051 cysK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006933 cysK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007130 cysK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006400 cysK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006175 cysK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006985 cysK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008152 cysK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000435 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000435 cysK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000532 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007231 cysK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004951 cysK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006741 cysK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008100 cysK CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110584 cysK CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082139 cysK CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002990 cysK CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097739 cysK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006844 cysK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004346 cysK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006030 cysK CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002256 cysK CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266513 cysK CDS
Person Approved Go view Shigella boydii 227 ADV-0002693 cysK CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008175 cysK CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002995 cysK CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073761 cysK CDS
Person Approved Go view Shigella flexneri 301 ABT-0088730 cysK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002638 cysK CDS
Person Approved Go view Shigella sonnei 046 ADD-0002738 cysK CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001036 VC0968 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005771 cysK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002933 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003607 cysK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001439 cysK_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001117 cysK CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002811 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240608 cysK CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002635 cysK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006243 cysK CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000517 cysK CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125325 cysK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007658 cysK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007119 cysK CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005645 cysK CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031167 cysK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007022 cysK CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001673 cysK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002521 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005618 cysK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005277 cysK CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002809 cysK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003365 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001670 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017627 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001840 cysK CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20787mutantTn5 InsertionRequest the StrainABE-0007957cysKcysK::Tn5KAN-2 at position 801 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2527409 to 2538380
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007936yfeHCDSforward25269462527944Upstream
ABE-0285067ypeBCDScomplement25279412528159Upstream
ABE-0007938ligACDScomplement25281612530176Upstream
ABE-0007942zipACDScomplement25302472531233Upstream
ABE-0007953cysZCDSforward25314632532224Upstream
ABE-0007957cysKCDSforward25324092533380Matches
ABE-0007962ptsHCDSforward25337642534021Downstream
ABE-0007967ptsICDSforward25340662535793Downstream
ABE-0007971crrCDSforward25358342536343Downstream
ABE-0007973pdxKCDScomplement25363862537237Downstream
ABE-0007977yfeKCDSforward25373422537716Downstream
ABE-0007979yfeSCDSforward25377492538483Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.