Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007962 (ptsH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007962 showshow history
Names
ptsH JW2408 iex? ECK2410 Hpr ctr b2415
Product
phosphocarrier protein HPr
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2533764 2534021 258 86
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000881
EnteroFam0007962: Trusted threshold=243.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR000032 (IPR000032 Phosphocarrier protein HPr-like) Apr 2008
Automated Process Approved IPR005698 (IPR005698 (DEPRECATED) Phosphotransferase system, phosphocarrier HPr protein) Apr 2008
Automated Process Approved IPR001020 (IPR001020 Phosphotransferase system, HPr histidine phosphorylation site) Apr 2008
Automated Process Approved IPR002114 (IPR002114 Phosphotransferase system, HPr serine phosphorylation site) Apr 2008
Automated Process Approved IPR035895 (IPR035895 HPr-like superfamily) Jul 2018
Automated Process Approved PF00381 (PF00381 PTS HPr component phosphorylation site) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001020
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000032
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000032
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ptsH Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym Hpr Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2410 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2408 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym iex? Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym ctr Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b2415 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product phosphocarrier protein HPr Published Annotation - EcoCyc Accession Number: EG10788
Reference: Escherichia coli K-12 MG1655
Oct 2021
Person Approved alternate product name phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name PTS system protein HPr Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Person Uncurated alternate product name PTS family Hpr protein, phosphohistidinoprotein-hexose phosphotransferase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007962: Trusted threshold=243.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000881
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR000032 Phosphocarrier protein HPr-like Protein Sequence Similarity - InterPro Domain: IPR000032
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR005698 (DEPRECATED) Phosphotransferase system, phosphocarrier HPr protein Protein Sequence Similarity - InterPro Domain: IPR005698
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR002114 Phosphotransferase system, HPr serine phosphorylation site Protein Sequence Similarity - InterPro Domain: IPR002114
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR035895 HPr-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035895
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Protein Sequence Similarity - InterPro Domain: IPR001020
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF00381 PTS HPr component phosphorylation site Protein Sequence Similarity - PFAM Model Name: PF00381
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Uncurated EC number 2.7.11.- Protein Sequence Similarity - InterPro Domain: IPR005698
Reference: Escherichia coli K-12 MG1655
Dec 2008
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.173 (transport; substrate; sugar) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.8.A.8 (transport; Group Translocators; Accessory Factors Involved in Transport; The Phosphotransferase System HPr (HPr) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:946886 Published Annotation - Entrez Gene Database ID: 946886
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P0AA04 Published Annotation - Swiss-Prot Accession Number: P0AA04 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AA04 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0007962 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1788755 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10788 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note PTS system protein HPr; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC75468.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001020
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000032
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000032
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000881 ptsH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000903 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000797 ptsH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000632 ptsH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001146 ptsH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001333 ptsH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000211 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002850 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129335 ptsH CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104787 ptsH CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104172 ptsH CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003181 ptsH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000903 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003263 ptsH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003946 ptsH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008314 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016785 ptsH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000857 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003880 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303596 ptsH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002680 ptsH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001144 ptsH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003112 ptsH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006842 ptsH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002459 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008810 ptsH CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005333 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001881 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006821 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009465 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079094 ptsH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002762 ptsH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003237 ptsH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009925 ptsH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008479 ptsH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002758 ptsH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007136 ptsH CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006989 ptsH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005510 ptsH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004984 ptsH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006682 ptsH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008486 ptsH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006331 ptsH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006278 ptsH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007935 ptsH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010765 ptsH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008061 ptsH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027389 ptsH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008016 ptsH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007223 ptsH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002965 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002271 ptsH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002493 ptsH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003170 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002861 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002961 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002781 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176942 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002754 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002569 ptsH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133306 ptsH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003606 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002757 ptsH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002537 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002064 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002771 ptsH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001114 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008162 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002129 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003493 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002089 ptsH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001923 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002843 ptsH CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001299 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010578 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001094 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290933 ptsH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005962 ptsH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061128 ptsH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000497 ptsH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001346 ptsH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005374 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139921 ptsH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006744 ptsH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000473 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002842 ptsH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007058 ptsH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007817 ptsH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007423 ptsH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006088 ptsH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007053 ptsH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006935 ptsH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007128 ptsH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006402 ptsH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006177 ptsH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006987 ptsH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008150 ptsH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000434 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000434 ptsH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000529 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007233 ptsH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004949 ptsH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006743 ptsH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008102 ptsH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110588 ptsH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082138 ptsH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002994 ptsH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097747 ptsH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006842 ptsH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004344 ptsH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006032 ptsH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002255 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265819 ptsH CDS
Person Approved Go view Shigella boydii 227 ADV-0002694 ptsH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008174 ptsH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004344 ptsH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002996 ptsH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073762 ptsH CDS
Person Approved Go view Shigella flexneri 301 ABT-0088731 ptsH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002639 ptsH CDS
Person Approved Go view Shigella sonnei 046 ADD-0002739 ptsH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001034 VC0966 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005774 ptsH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002934 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003603 hpr CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001440 hpr CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001118 ptsH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002810 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240609 ptsH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006863 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002636 ptsH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006244 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000516 ptsH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125329 ptsH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007657 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007118 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0004954 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005646 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031166 ptsH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007021 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001672 ptsH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002522 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005617 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005276 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002810 ptsH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003366 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001669 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017634 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001841 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20788mutantTn5 InsertionRequest the StrainABE-0007962ptsHptsH::Tn5KAN-2 at position 37 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2528764 to 2539021
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007938ligACDScomplement25281612530176Upstream
ABE-0007942zipACDScomplement25302472531233Upstream
ABE-0007953cysZCDSforward25314632532224Upstream
ABE-0007957cysKCDSforward25324092533380Upstream
ABE-0007962ptsHCDSforward25337642534021Matches
ABE-0007967ptsICDSforward25340662535793Downstream
ABE-0007971crrCDSforward25358342536343Downstream
ABE-0007973pdxKCDScomplement25363862537237Downstream
ABE-0007977yfeKCDSforward25373422537716Downstream
ABE-0007979yfeSCDSforward25377492538483Downstream
ABE-0285516repeat_regionforward25385352538632Downstream
ABE-0007982cysMCDScomplement25386722539583Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.