Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007971 (crr) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007971 showshow history
Names
crr JW2410 treD ECK2412 tgs iex gsr b2417
Product
PTS system glucose-specific IIA component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2535834 2536343 510 170
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000882
EnteroFam0007971: Trusted threshold=476.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001127 (IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1) Apr 2008
Automated Process Approved IPR011055 (IPR011055 Duplicated hybrid motif) Apr 2008
Automated Process Approved PF00358 (PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name crr Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym gsr Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym iex Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW2410 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym treD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK2412 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym tgs Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b2417 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product PTS system glucose-specific IIA component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name PTS family enzyme IIA component Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name PTS system, glucose-specific IIA component Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007971: Trusted threshold=476.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000882
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Protein Sequence Similarity - PFAM Model Name: PF00358
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 Protein Sequence Similarity - InterPro Domain: IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011055 Duplicated hybrid motif Protein Sequence Similarity - InterPro Domain: IPR011055
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.1.- Published Annotation - Swiss-Prot Accession Number: P69783 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.4.A.2 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Fructose-Mannitol (Fru) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.45 (transport; substrate; D-glucose/trehalose) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788757 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946880 Published Annotation - Entrez Gene Database ID: 946880
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG10165 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007971 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69783 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P69783 Published Annotation - Swiss-Prot Accession Number: P69783 Jan 2006
Person Approved function enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note PTS system, glucose-specific IIA component; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75470.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001127
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000882 crr CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000905 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000621 crr CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000852 crr CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001143 crr CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001231 crr CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000213 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002852 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129333 crr CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104785 crr CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104170 crr CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003183 crr CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000901 ptbA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003265 crr CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003948 crr CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008316 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016783 crr CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000855 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003882 ptbA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303606 crr CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002682 crr CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001142 crr CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003110 crr CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006840 crr CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002461 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008808 crr CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002382 crr CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001879 ptbA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006819 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006728 crr CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009467 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079096 crr CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002764 crr CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003239 crr CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009923 crr CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008481 crr CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002760 crr CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007138 crr CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000761 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006991 crr CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005512 crr CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004986 crr CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006680 crr CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008488 crr CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006329 crr CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006280 crr CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008139 crr CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007937 crr CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010767 crr CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006536 crr CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008063 crr CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027391 crr CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008018 crr CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007225 crr CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002967 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002273 crr CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002495 crr CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003168 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002863 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002959 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002783 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176945 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002756 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002571 crr CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133308 crr CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003608 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002759 crr CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002539 ptbA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002062 ptbA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002773 crr CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001116 ptbA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008164 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002131 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003495 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002091 crr CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001921 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002845 crr CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001297 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010580 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001092 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290931 crr CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005964 crr CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061126 crr CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000495 crr CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000218 crr CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001344 crr CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005372 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139917 crr CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006746 crr CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000470 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002844 crr CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007060 crr CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007827 crr CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007433 crr CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006086 crr CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007055 crr CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006937 crr CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007126 crr CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006404 crr CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006179 crr CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006989 crr CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008148 crr CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000432 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000432 crr CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000527 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007235 crr CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004947 crr CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006745 crr CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008927 crr CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110597 crr CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082136 crr CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0002996 crr CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097753 crr CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006840 crr CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004342 crr CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006034 crr CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002253 ptbA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265817 crr CDS
Person Approved Go view Shigella boydii 227 ADV-0002696 crr CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008172 crr CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004346 crr CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002998 crr CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073764 crr CDS
Person Approved Go view Shigella flexneri 301 ABT-0088733 crr CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002641 crr CDS
Person Approved Go view Shigella sonnei 046 ADD-0002741 crr CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001032 VC0964 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005780 crr CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002936 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003595 crr CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001442 crr CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003577 crr CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002808 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240611 crr CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006865 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002638 crr CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006246 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000514 crr CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125336 crr CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007655 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007116 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0004956 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005648 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031164 crr CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007019 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001670 crr CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002524 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005615 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005274 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002812 crr CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003368 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001667 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017645 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001843 ptbA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20790mutantTn5 InsertionRequest the StrainABE-0007971crrcrr::Tn5KAN-2 at position 429 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2530834 to 2541343
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007942zipACDScomplement25302472531233Upstream
ABE-0007953cysZCDSforward25314632532224Upstream
ABE-0007957cysKCDSforward25324092533380Upstream
ABE-0007962ptsHCDSforward25337642534021Upstream
ABE-0007967ptsICDSforward25340662535793Upstream
ABE-0007971crrCDSforward25358342536343Matches
ABE-0007973pdxKCDScomplement25363862537237Downstream
ABE-0007977yfeKCDSforward25373422537716Downstream
ABE-0007979yfeSCDSforward25377492538483Downstream
ABE-0285516repeat_regionforward25385352538632Downstream
ABE-0007982cysMCDScomplement25386722539583Downstream
ABE-0285517repeat_regionforward25396072539642Downstream
ABE-0007986cysACDScomplement25397172540814Downstream
ABE-0007988cysWCDScomplement25408042541679Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.