Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007982 (cysM) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007982 showshow history
Names
cysM JW2414 ECK2416 b2421
Product
cysteine synthase B (O-acetylserine sulfhydrolase B)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2538672 2539583 912 304
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000883
EnteroFam0007982: Trusted threshold=768.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001216 (IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site) Apr 2008
Automated Process Approved IPR005856 (IPR005856 Cysteine synthase) Apr 2008
Automated Process Approved IPR001926 (IPR001926 Pyridoxal-phosphate dependent enzyme) Apr 2008
Automated Process Approved IPR005858 (IPR005858 Cysteine synthase CysM) Apr 2008
Automated Process Approved IPR036052 (IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme) Jul 2018
Automated Process Approved PF00291 (PF00291 Pyridoxal-phosphate dependent enzyme) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0019344 cysteine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006535 cysteine biosynthetic process from serine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001216
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004124 cysteine synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cysM Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2416 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2414 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2421 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product cysteine synthase B (O-acetylserine sulfhydrolase B) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name cysteine synthase B (O-acetylserine sulfhydrolase B) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name cysteine synthase B, O-acetylserine sulfhydrolase B Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0007982: Trusted threshold=768.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000883
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005858 Cysteine synthase CysM Protein Sequence Similarity - InterPro Domain: IPR005858
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site Protein Sequence Similarity - InterPro Domain: IPR001216
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00291 Pyridoxal-phosphate dependent enzyme Protein Sequence Similarity - PFAM Model Name: PF00291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Protein Sequence Similarity - InterPro Domain: IPR036052
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001926 Pyridoxal-phosphate dependent enzyme Protein Sequence Similarity - InterPro Domain: IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005856 Cysteine synthase Protein Sequence Similarity - InterPro Domain: IPR005856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.5.1.47 Published Annotation - Swiss-Prot Accession Number: P16703 Feb 2006
Person Uncurated MultiFun 1.5.1.12 (metabolism; building block biosynthesis; amino acids; cysteine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946888 Published Annotation - Entrez Gene Database ID: 946888
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P16703 Published Annotation - Swiss-Prot Accession Number: P16703 Jan 2005
Automated Process Approved db xref GI:2367138 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P16703 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007982 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10193 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Cysteine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note cysteine synthase B, O-acetylserine sulfhydrolase B; GO_process: GO:0019344 - cysteine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75474.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0019344 cysteine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006535 cysteine biosynthetic process from serine GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001216
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004124 cysteine synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005856
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001926
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000883 cysM CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000907 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001373 cysM CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001449 cysM CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001179 cysM CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001372 cysM CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000218 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002857 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003184 cysM CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000899 cysM CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003270 cysM_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003953 cysM CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008323 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016769 cysM CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000846 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003884 cysM CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303617 cysM CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002686 cysM CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001139 cysM CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003104 cysM CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006835 cysM CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002464 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008803 cysM CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002385 cysM CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001876 cysM CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006815 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006731 cysM CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009471 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079099 cysM CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002767 cysM CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003242 cysM CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009920 cysM CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008484 cysM CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002763 cysM CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007141 cysM CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000764 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006994 cysM CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005515 cysM CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004989 cysM CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006677 cysM CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008491 cysM CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006326 cysM CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006283 cysM CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008142 cysM CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007940 cysM CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010770 cysM CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006539 cysM CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008066 cysM CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027394 cysM CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008021 cysM CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007230 cysM CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002970 cysM CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002277 cysM CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002499 cysM CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003165 cysM CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002866 cysM CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002955 cysM CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002786 cysM CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176949 cysM CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002759 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002575 cysM CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133311 cysM CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003611 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002762 cysM CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002542 cysM CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002061 cysM CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002778 cysM CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001118 cysM CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008170 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002134 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003498 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002094 cysM CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001918 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002848 cysM CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001294 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010583 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001089 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290928 cysM CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005967 cysM CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061121 cysM CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000475 cysM CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001424 cysM CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001339 cysM CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005367 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139914 cysM CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001722 cysM CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006753 cysM CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000463 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002853 cysM CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007067 cysM CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007847 cysM CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007453 cysM CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006080 cysM CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007062 cysM CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006944 cysM CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007120 cysM CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006410 cysM CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006185 cysM CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006996 cysM CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008141 cysM CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000427 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000426 cysM CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000520 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007241 cysM CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004940 cysM CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006751 cysM CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110612 cysM CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082130 cysM CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003003 cysM CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097773 cysM CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006833 cysM CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004336 cysM CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006041 cysM CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002250 cysM CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267240 cysM CDS
Person Approved Go view Shigella boydii 227 ADV-0002702 cysM CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008202 cysM CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004350 cysM CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003001 cysM CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073769 cysM CDS
Person Approved Go view Shigella flexneri 301 ABT-0256066 cysM CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002646 cysM CDS
Person Approved Go view Shigella sonnei 046 ADD-0002746 cysM CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000586 VC0537 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005793 cysM CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002941 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003569 cysM CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001447 cysM CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003588 cysM CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002796 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240653 cysM CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006880 cysM CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002656 cysM CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006262 cysM CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000500 cysM CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125397 cysM CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007640 cysM CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007102 cysM CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001098 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0004971 cysM CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005664 cysM CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031147 cysM CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008755 cysM CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001652 cysM CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002542 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005600 cysM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005262 cysM CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002826 cysM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003386 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001649 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017657 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001845 cysM CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20791mutantTn5 InsertionRequest the StrainABE-0007982cysMcysM::Tn5KAN-I-SceI at position 280 in Minus orientation ,+ pKD460Blattner Laboratory
FB20792mutantTn5 InsertionRequest the StrainABE-0007982cysMcysM::Tn5KAN-I-SceI at position 280 in Minus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2533672 to 2544583
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007962ptsHCDSforward25337642534021Downstream
ABE-0007967ptsICDSforward25340662535793Downstream
ABE-0007971crrCDSforward25358342536343Downstream
ABE-0007973pdxKCDScomplement25363862537237Downstream
ABE-0007977yfeKCDSforward25373422537716Downstream
ABE-0007979yfeSCDSforward25377492538483Downstream
ABE-0285516repeat_regionforward25385352538632Downstream
ABE-0007982cysMCDScomplement25386722539583Matches
ABE-0285517repeat_regionforward25396072539642Upstream
ABE-0007986cysACDScomplement25397172540814Upstream
ABE-0007988cysWCDScomplement25408042541679Upstream
ABE-0007990cysUCDScomplement25416792542512Upstream
ABE-0007992cysPCDScomplement25425122543528Upstream
ABE-0007996ucpACDScomplement25438322544623Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.