Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007988 (cysW) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007988 showshow history
Names
cysW JW2416 ECK2418 b2423
Product
membrane component of an ABC superfamily sulfate/thiosulfate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2540804 2541679 876 292
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005667 (IPR005667 Sulphate ABC transporter permease protein 2) Apr 2008
Automated Process Approved IPR011866 (IPR011866 Sulphate ABC transporter, permease protein CysW) Apr 2008
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015419 ABC-type sulfate transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005667
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015563 (DEPRECATED) uptake transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015116 sulfate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cysW Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2418 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2416 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2423 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane component of an ABC superfamily sulfate/thiosulfate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Approved alternate product name sulfate transport system permease W protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name thiosulfate permease W protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name sulfate/thiosulfate ABC transporter subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011866 Sulphate ABC transporter, permease protein CysW Protein Sequence Similarity - InterPro Domain: IPR011866
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005667 Sulphate ABC transporter permease protein 2 Protein Sequence Similarity - InterPro Domain: IPR005667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 7.3.2.3 Published Annotation - Database Name: EC2GO: GO:0015419
Reference: Escherichia coli K-12 MG1655 		Dec 2019
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.178 (transport; substrate; thiosulfate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007988 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10198 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEB0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AEB0 Published Annotation - Swiss-Prot Accession Number: P0AEB0 Jan 2006
Automated Process Approved db xref GeneID:2847743 Published Annotation - Entrez Gene Database ID: 2847743
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87082099 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Anions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note sulfate transport system permease W protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006790 - sulfur metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75476.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015419 ABC-type sulfate transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005667
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015563 (DEPRECATED) uptake transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015116 sulfate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011866
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002824 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000554 cysW CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000584 cysW CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000196 cysW CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000288 cysW CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002858 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003186 cysW CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000897 cysW CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003272 cysW_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003955 cysW_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005627 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019862 cysW CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003186 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003886 cysW CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303624 cysW CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002688 cysW CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001137 cysW CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003102 cysW CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006833 cysW CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002466 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008801 cysW CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002387 cysW CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001874 cysW CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006813 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006733 cysW CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009473 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079101 cysW CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002769 cysW CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003244 cysW CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009918 cysW CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008486 cysW CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002765 cysW CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007143 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000766 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006996 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005517 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004991 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006675 cysW CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008493 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006324 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006285 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008144 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007942 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010772 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006541 cysW CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008068 cysW CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027396 cysW CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008023 cysW_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007232 cysW CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002972 cysW CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002279 cysW CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002501 cysW CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003163 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002868 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002953 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002788 cysW CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176951 cysW CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002761 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002577 cysW CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133313 cysW CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003613 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002764 cysW CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002544 cysW CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002059 cysW CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002780 cysW CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001120 cysW CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007696 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002136 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003500 cysW CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002096 cysW CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001916 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002850 cysW CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001292 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010585 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001087 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290926 cysW CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005969 cysW CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061120 cysW CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003855 cysW CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003556 cysW CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001338 cysW CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005366 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000312 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006755 cysW CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000461 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002855 cysW CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007069 cysW CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007854 cysW CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007460 cysW CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006078 cysW CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007064 cysW CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006946 cysW CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007117 cysW CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006412 cysW CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006187 cysW CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006998 cysW CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008139 cysW CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000425 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000424 cysW CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000518 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007243 cysW CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004938 cysW CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006754 cysW CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007470 cysW CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110619 cysW CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082128 cysW CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003005 cysW CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097778 cysW CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006830 cysW CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004333 cysW CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006043 cysW CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002248 cysW CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267243 cysW-1 CDS
Person Approved Go view Shigella boydii 227 ADV-0002704 cysW CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008204 cysW CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004352 cysW CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003003 cysW CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073772 cysW CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0088737 cysW pseudogene
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002648 cysW CDS
Person Approved Go view Shigella sonnei 046 ADD-0002748 cysW CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000589 VC0540 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005801 cysW CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003574 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003561 cysW CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001449 cysW CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003158 cysW CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002794 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240655 cysW CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006882 cysW CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002658 cysW CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006264 cysW CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000498 cysW CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125404 cysW CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007638 cysW CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007100 cysW CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001096 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0004973 cysW CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005666 cysW CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031145 cysW CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008753 cysW CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001650 cysW CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002544 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005598 cysW CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005260 cysW CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002828 cysW CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003388 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001647 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017674 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001847 cysW CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20794mutantTn5 InsertionRequest the StrainABE-0007988cysWcysW::Tn5KAN-2 at position 271 in Plus orientation ,- pKD460Blattner Laboratory
FB20795mutantTn5 InsertionRequest the StrainABE-0007988cysWcysW::Tn5KAN-2 at position 271 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2535804 to 2546679
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007971crrCDSforward25358342536343Downstream
ABE-0007973pdxKCDScomplement25363862537237Downstream
ABE-0007977yfeKCDSforward25373422537716Downstream
ABE-0007979yfeSCDSforward25377492538483Downstream
ABE-0285516repeat_regionforward25385352538632Downstream
ABE-0007982cysMCDScomplement25386722539583Downstream
ABE-0285517repeat_regionforward25396072539642Downstream
ABE-0007986cysACDScomplement25397172540814Overlaps Downstream
ABE-0007988cysWCDScomplement25408042541679Matches
ABE-0007990cysUCDScomplement25416792542512Overlaps Upstream
ABE-0007992cysPCDScomplement25425122543528Upstream
ABE-0007996ucpACDScomplement25438322544623Upstream
ABE-0008000murRCDScomplement25447522545609Upstream
ABE-0008007murQCDSforward25457732546669Upstream
ABE-0008009murPCDSforward25466732548097Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.