Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007990 (cysU) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007990 showshow history
Names
cysU cysT JW2417 ECK2419 b2424
Product
membrane component of an ABC superfamily sulfate/thiosulfate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2541679 2542512 834 278
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005667 (IPR005667 Sulphate ABC transporter permease protein 2) Apr 2008
Automated Process Approved IPR011865 (IPR011865 Sulphate ABC transporter, permease protein CysT) Apr 2008
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Apr 2008
Automated Process Approved IPR035906 (IPR035906 MetI-like superfamily) Jul 2018
Automated Process Approved PF00528 (PF00528 Binding-protein-dependent transport system inner membrane component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011865
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011865
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011865
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0015419 ABC-type sulfate transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005667
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015116 sulfate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011865
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015563 (DEPRECATED) uptake transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cysU Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2419 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2417 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated synonym cysT Published Sequence Analysis - PubMed ID: 2188958
Reference: Escherichia coli K-12 		May 2009
Person Approved locus tag b2424 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily sulfate/thiosulfate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name thiosulfate transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name sulfate, thiosulfate transport system permease T protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name sulfate/thiosulfate ABC transporter permease Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR035906 MetI-like superfamily Protein Sequence Similarity - InterPro Domain: IPR035906
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00528 Binding-protein-dependent transport system inner membrane component Protein Sequence Similarity - PFAM Model Name: PF00528
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011865 Sulphate ABC transporter, permease protein CysT Protein Sequence Similarity - InterPro Domain: IPR011865
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005667 Sulphate ABC transporter permease protein 2 Protein Sequence Similarity - InterPro Domain: IPR005667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 7.3.2.3 Published Annotation - EcoCyc Accession Number: EG10197
Reference: Escherichia coli K-12 MG1655 		Dec 2019
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.178 (transport; substrate; thiosulfate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007990 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10197 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P16701 Published Annotation - Swiss-Prot Accession Number: P16701 Jan 2005
Automated Process Approved db xref GI:1788764 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946882 Published Annotation - Entrez Gene Database ID: 946882
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P16701 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Anions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note sulfate, thiosulfate transport system permease T protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006790 - sulfur metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75477.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000515
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011865
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011865
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011865
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015419 ABC-type sulfate transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005667
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015116 sulfate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011865
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015563 (DEPRECATED) uptake transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005667
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002825 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000618 cysU CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000964 cysU CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000614 cysU CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000361 cysU CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002859 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003187 cysT CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000896 cysT CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003273 cysW_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0003956 cysW_3 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005625 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0019863 cysU CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003187 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003887 cysT CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303629 cysU CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002689 cysU CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001136 cysT CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003101 cysT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006832 cysT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002467 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008800 cysT CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002388 cysT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001873 cysT CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006811 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006734 cysT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009474 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079102 cysU CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002770 cysT CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003245 cysT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009917 cysT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008487 cysT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002766 cysU CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007144 cysT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000767 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006997 cysT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005518 cysT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004992 cysT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006674 cysT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008494 cysT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006323 cysT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006286 cysT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008145 cysT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007943 cysT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006542 cysT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008069 cysT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027397 cysU CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008024 cysT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007233 cysT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002973 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002280 cysU CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002502 cysU CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003162 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002869 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002952 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002789 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176952 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002762 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002578 cysT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133314 cysU CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003614 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002765 cysU CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002545 cysT CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002058 cysT CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002781 cysU CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001121 cysT CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007697 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002137 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003501 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002097 cysU CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001915 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002851 cysU CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001291 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010586 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001086 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290925 cysU CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005970 cysT CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061119 cysT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000474 cysT CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003557 cysT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001337 cysT CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005364 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139907 cysT CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000311 cysT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006756 cysT CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000460 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002856 cysU CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007070 cysT CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007858 cysU CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007464 cysU CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006077 cysT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007065 cysT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006947 cysT CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007116 cysT CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006413 cysT CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006188 cysT CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006999 cysT CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008138 cysT CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000424 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000423 cysU CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000517 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007244 cysT CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004937 cysT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006755 cysT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007469 cysT CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110623 cysU CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082127 cysU CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003006 cysU CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097781 cysU CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006829 cysT CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004332 cysT CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006044 cysT CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002247 cysT CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267242 cysT-1 CDS
Person Approved Go view Shigella boydii 227 ADV-0002705 cysU CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008205 cysT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004353 cysT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003004 cysU CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073773 cysU CDS
Person Approved Go view Shigella flexneri 301 ABT-0256067 cysU CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002649 cysU CDS
Person Approved Go view Shigella sonnei 046 ADD-0002749 cysU CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000588 VC0539 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005802 cysU CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003575 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003556 cysT CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001450 cysT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003159 cysU CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002793 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240662 cysU CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006883 cysU CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002659 cysU CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006265 cysU CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000497 cysU CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125413 cysU CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007637 cysU CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007099 cysU CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001095 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0004974 cysU CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005667 cysU CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031144 cysU CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008752 cysU CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001648 cysU CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002545 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005597 cysU CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005259 cysU CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002829 cysU CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003389 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001645 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017681 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001848 cysT CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2536679 to 2547512
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007973pdxKCDScomplement25363862537237Downstream
ABE-0007977yfeKCDSforward25373422537716Downstream
ABE-0007979yfeSCDSforward25377492538483Downstream
ABE-0285516repeat_regionforward25385352538632Downstream
ABE-0007982cysMCDScomplement25386722539583Downstream
ABE-0285517repeat_regionforward25396072539642Downstream
ABE-0007986cysACDScomplement25397172540814Downstream
ABE-0007988cysWCDScomplement25408042541679Overlaps Downstream
ABE-0007990cysUCDScomplement25416792542512Matches
ABE-0007992cysPCDScomplement25425122543528Overlaps Upstream
ABE-0007996ucpACDScomplement25438322544623Upstream
ABE-0008000murRCDScomplement25447522545609Upstream
ABE-0008007murQCDSforward25457732546669Upstream
ABE-0008009murPCDSforward25466732548097Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.