Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0007992 (cysP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0007992 showshow history
Names
cysP JW2418 ECK2420 b2425
Product
periplasmic-binding component of an ABC superfamily thiosulfate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2542512 2543528 1017 339
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005669 (IPR005669 Thiosulphate/Sulfate-binding protein) Apr 2008
Automated Process Approved IPR006059 (IPR006059 Bacterial extracellular solute-binding protein) Apr 2008
Automated Process Approved IPR000957 (IPR000957 Sulphate/thiosulphate-binding, conserved site) Apr 2008
Automated Process Approved IPR002052 (IPR002052 DNA methylase, N-6 adenine-specific, conserved site) Apr 2008
Automated Process Approved PF13531 (PF13531 Bacterial extracellular solute-binding protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0032259 methylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002052
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002052
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002052
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015419 ABC-type sulfate transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008271 secondary active sulfate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cysP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2420 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2418 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2425 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product periplasmic-binding component of an ABC superfamily thiosulfate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Person Uncurated alternate product name thiosulfate transport protein (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name thiosulfate binding protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name thiosulfate-binding protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR006059 Bacterial extracellular solute-binding protein Protein Sequence Similarity - InterPro Domain: IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002052 DNA methylase, N-6 adenine-specific, conserved site Protein Sequence Similarity - InterPro Domain: IPR002052
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005669 Thiosulphate/Sulfate-binding protein Protein Sequence Similarity - InterPro Domain: IPR005669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13531 Bacterial extracellular solute-binding protein Protein Sequence Similarity - PFAM Model Name: PF13531
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000957 Sulphate/thiosulphate-binding, conserved site Protein Sequence Similarity - InterPro Domain: IPR000957
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.3.25 Published Annotation - Database Name: EC2GO: GO:0015419
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 2.1.1.- Protein Sequence Similarity - InterPro Domain: IPR002052
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.178 (transport; substrate; thiosulfate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0007992 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10195 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P16700 Published Annotation - Swiss-Prot Accession Number: P16700 Jan 2005
Automated Process Approved db xref GI:1788765 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946883 Published Annotation - Entrez Gene Database ID: 946883
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P16700 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Anions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note thiosulfate binding protein; periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006790 - sulfur metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75478.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0032259 methylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002052
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015419 ABC-type sulfate transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005669
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002052
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002052
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008271 secondary active sulfate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000957
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002826 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001677 cysP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001715 cysP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001180 cysP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001776 cysP CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002860 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003188 cysP CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000895 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003274 cysP CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003957 cysP CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003888 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303634 cysP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002690 cysP CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001135 cysP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003100 cysP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006831 cysP CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002468 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008799 cysP CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002389 cysP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001872 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006809 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006735 cysP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009475 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079103 cysP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002771 cysP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003246 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009916 cysP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008488 cysP CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002767 cysP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007145 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000768 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006998 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005519 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004993 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006673 cysP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008495 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006322 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006287 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008146 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007944 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006626 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006543 cysP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008070 cysP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027398 cysP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008025 cysP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007234 cysP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002974 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002281 cysP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002503 cysP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003161 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002870 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002951 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002790 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176953 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002763 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002579 cysP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133315 cysP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003615 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002766 cysP CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002546 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002057 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002782 cysP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001122 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002138 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003502 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002098 cysP CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001914 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002852 cysP CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001290 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010587 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001085 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290924 cysP CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005971 cysP CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061118 cysP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000473 cysP CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001423 cysP CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001336 cysP CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005362 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139905 cysP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006757 cysP CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000459 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002857 cysP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007071 cysP CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007863 cysP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007469 cysP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006076 cysP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007066 cysP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006948 cysP CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007115 cysP CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006414 cysP CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006189 cysP CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007000 cysP CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008137 cysP CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000423 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000422 cysP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000516 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007245 cysP CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004936 cysP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006756 cysP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007468 cysP CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110626 cysP CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082126 cysP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003007 cysP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097784 cysP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006828 cysP CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004331 cysP CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006045 cysP CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002246 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267241 cysP CDS
Person Approved Go view Shigella boydii 227 ADV-0002706 cysP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008206 cysP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004354 cysP CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003005 cysP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073774 cysP CDS
Person Approved Go view Shigella flexneri 301 ABT-0088738 cysP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002650 cysP CDS
Person Approved Go view Shigella sonnei 046 ADD-0002750 cysP CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000587 VC0538 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005803 cysP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003576 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003554 cysP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001451 cysP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003160 cysP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002792 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240670 cysP CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006884 cysP CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002661 cysP CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006266 cysP CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000496 cysP CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125423 cysP CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007636 cysP CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007098 cysP CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001094 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0004975 cysP CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005668 cysP CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031143 cysP CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008751 cysP CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001646 cysP CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002547 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005596 cysP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005258 cysP CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002830 cysP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003391 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001643 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017688 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001849 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20796mutantTn5 InsertionRequest the StrainABE-0007992cysPcysP::Tn5KAN-2 at position 344 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2537512 to 2548528
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007977yfeKCDSforward25373422537716Downstream
ABE-0007979yfeSCDSforward25377492538483Downstream
ABE-0285516repeat_regionforward25385352538632Downstream
ABE-0007982cysMCDScomplement25386722539583Downstream
ABE-0285517repeat_regionforward25396072539642Downstream
ABE-0007986cysACDScomplement25397172540814Downstream
ABE-0007988cysWCDScomplement25408042541679Downstream
ABE-0007990cysUCDScomplement25416792542512Overlaps Downstream
ABE-0007992cysPCDScomplement25425122543528Matches
ABE-0007996ucpACDScomplement25438322544623Upstream
ABE-0008000murRCDScomplement25447522545609Upstream
ABE-0008007murQCDSforward25457732546669Upstream
ABE-0008009murPCDSforward25466732548097Upstream
ABE-0008012yfeWCDSforward25481022549406Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.