Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008009 (murP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008009 showshow history
Names
murP yfeV JW2422 ECK2424 b2429
Product
PTS system N-acetylmuramic acid-specific EIIBC component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2546673 2548097 1425 475
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001996 (IPR001996 Phosphotransferase system, IIB component, type 1) Apr 2008
Automated Process Approved IPR013013 (IPR013013 Phosphotransferase system, EIIC component, type 1) Apr 2008
Automated Process Approved IPR003352 (IPR003352 Phosphotransferase system, EIIC) Apr 2008
Automated Process Approved IPR018113 (IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site) Jul 2018
Automated Process Approved IPR036878 (IPR036878 Glucose permease domain IIB) Jul 2018
Automated Process Approved PF02378 (PF02378 Phosphotransferase system, EIIC) Jul 2018
Automated Process Approved PF00367 (PF00367 phosphotransferase system, EIIB) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003352, IPR018113, IPR036878
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name murP Published Annotation - PubMed ID: 15060041
Reference: Escherichia coli K-12 MG1655 		Mar 2008
Person Approved synonym ECK2424 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2422 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yfeV Published Annotation - Swiss-Prot Accession Number: P77272 Jan 2006
Person Approved locus tag b2429 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product PTS system N-acetylmuramic acid-specific EIIBC component Experimental - PubMed ID: 15060041
Reference: Escherichia coli K-12 MG1655 		Mar 2008
Automated Process Approved alternate product name N-acetylmuramic acid permease, EIIBC component, PTS system Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR001996 Phosphotransferase system, IIB component, type 1 Protein Sequence Similarity - InterPro Domain: IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013013 Phosphotransferase system, EIIC component, type 1 Protein Sequence Similarity - InterPro Domain: IPR013013
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00367 phosphotransferase system, EIIB Protein Sequence Similarity - PFAM Model Name: PF00367
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02378 Phosphotransferase system, EIIC Protein Sequence Similarity - PFAM Model Name: PF02378
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036878 Glucose permease domain IIB Protein Sequence Similarity - InterPro Domain: IPR036878
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site Protein Sequence Similarity - InterPro Domain: IPR018113
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003352 Phosphotransferase system, EIIC Protein Sequence Similarity - InterPro Domain: IPR003352
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.1.69 Published Annotation - Swiss-Prot Accession Number: P77272 Feb 2006
Person Uncurated MultiFun 4.4.A.1 (transport; Group Translocators; Phosphotransferase Systems (PEP-dependent PTS); The PTS Glucose-Glucoside (Glc) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788769 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77272 Published Annotation - Swiss-Prot Accession Number: P77272 Jan 2006
Automated Process Approved db xref ASAP:ABE-0008009 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77272 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG14163 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946894 Published Annotation - Entrez Gene Database ID: 946894
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved function transport; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75482.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003352, IPR018113, IPR036878
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001996
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006253 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002385 murP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002182 murP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002036 murP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002006 murP CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000196 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006827 murP CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002471 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008795 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002392 yfeV CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001869 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006805 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006739 murP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009479 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079106 murP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002775 murP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003250 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008492 murP CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002772 murP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007149 murP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000772 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007002 murP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005523 murP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004997 murP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006669 murP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008499 murP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006318 murP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006291 murP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008150 murP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007948 murP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006630 murP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006547 murP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008074 murP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027402 murP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008028 murP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007238 murP CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002285 murP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002507 murP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003157 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002874 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002946 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002767 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002583 murP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133319 murP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003619 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002769 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0004092 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003413 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002323 murP CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003548 scrA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0000435 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000317 scrA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0004067 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003824 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288929 murP CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007310 yfeV CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137686 murP CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000453 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0002710 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008210 murP CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0003009 CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0073779 CDS
Person Approved Go view Shigella flexneri 301 ABT-0088742 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002654 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000223 VC0207 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007791 yfeV CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001189 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010592 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001958 murP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002059 murP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000303 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22736mutantTn5 InsertionRequest the StrainABE-0008009murPb2429::Tn5KAN-I-SceI at position 1286 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2541673 to 2553097
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0007988cysWCDScomplement25408042541679Upstream
ABE-0007990cysUCDScomplement25416792542512Upstream
ABE-0007992cysPCDScomplement25425122543528Upstream
ABE-0007996ucpACDScomplement25438322544623Upstream
ABE-0008000murRCDScomplement25447522545609Upstream
ABE-0008007murQCDSforward25457732546669Upstream
ABE-0008009murPCDSforward25466732548097Matches
ABE-0008012yfeWCDSforward25481022549406Downstream
ABE-0285518repeat_regionforward25494662549563Downstream
ABE-0008015yfeXCDScomplement25496462550545Downstream
ABE-0008017yfeYCDScomplement25506412551216Downstream
ABE-0008023yfeZCDScomplement25512772551726Downstream
ABE-0008028ypeACDScomplement25517132552138Downstream
ABE-0008032amiACDSforward25523522553221Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.