Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008015 (yfeX) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008015 showshow history
Names
yfeX JW2424 ECK2426 b2431
Product
porphyrinogen peroxidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2549646 2550545 900 300
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000886
EnteroFam0008015: Trusted threshold=786; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006314 (IPR006314 Dyp-type peroxidase) Apr 2008
Automated Process Approved IPR011008 (IPR011008 Dimeric alpha-beta barrel) Jul 2018
Automated Process Approved PF04261 (PF04261 Dyp-type peroxidase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006314
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006314
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0004601 peroxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006314
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name yfeX Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2426 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2424 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2431 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product porphyrinogen peroxidase Published Annotation - EcoCyc Accession Number: G7266
Reference: Escherichia coli K-12 MG1655 		Jan 2021
Automated Process Approved alternate product name porphyrinogen oxidase, cytoplasmic Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name conserved protein Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008015: Trusted threshold=786; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000886
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006314 Dyp-type peroxidase Protein Sequence Similarity - InterPro Domain: IPR006314
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011008 Dimeric alpha-beta barrel Protein Sequence Similarity - InterPro Domain: IPR011008
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF04261 Dyp-type peroxidase family Protein Sequence Similarity - PFAM Model Name: PF04261
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.11.1.7 Published Annotation - Database Name: EC2GO: GO:0004601
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 1.11.1.- Protein Sequence Similarity - InterPro Domain: IPR006314
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008015 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082102 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946913 Published Annotation - Entrez Gene Database ID: 946913
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P76536 Published Annotation - Swiss-Prot Accession Number: P76536 Jan 2006
Automated Process Approved db xref EcoGene:EG14165 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76536 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75484.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006314
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0004601 peroxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006314
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006314
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000886 yfeX CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000908 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001846 yfeX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001904 yfeX CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001600 yfeX CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001984 yfeX CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000219 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002861 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003189 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000894 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003276 yfeX CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003959 yfeX CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008324 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016768 yfeX CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000845 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003889 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003093 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006826 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002472 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008793 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005334 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001867 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006802 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006741 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009481 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079109 yfeX CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002777 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003252 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008494 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002773 yfeX CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007151 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000774 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007004 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005525 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0004999 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006667 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008501 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006316 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006293 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008152 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007950 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006632 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006549 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008076 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027404 yfeX CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008029 yfeX CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007241 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002978 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002287 yfeX CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002509 yfeX CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003155 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002876 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002944 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002795 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002769 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002585 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133321 yfeX CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003621 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002772 yfeX CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002547 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002056 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002783 yfeX CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001123 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008171 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010588 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061117 yfeX CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000472 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001422 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001335 yfeX CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005361 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006759 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000451 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002860 yfeX CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007073 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007871 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007477 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006074 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007068 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006950 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007113 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006416 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006191 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007002 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008135 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000421 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000420 yfeX CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000514 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007247 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004934 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006758 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007466 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110635 yfeX CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082124 yfeX CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003009 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097793 yfeX CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006826 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004329 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006047 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002245 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264295 CDS
Person Approved Go view Shigella boydii 227 ADV-0002712 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008212 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004362 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003014 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073781 yfeX CDS
Person Approved Go view Shigella flexneri 301 ABT-0088743 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002655 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002756 yfeX CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002221 VC2145 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000834 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003535 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001458 yfeX CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003161 yfeX CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003567 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240705 yfeX CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006892 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002671 yfeX CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006274 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000488 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125457 yfeX CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007628 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007090 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003340 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0004983 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005676 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031134 yfeX CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008743 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001638 yfeX CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002556 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005588 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005251 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002838 yfeX CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003401 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001634 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017701 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001851 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2544646 to 2555545
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008000murRCDScomplement25447522545609Downstream
ABE-0008007murQCDSforward25457732546669Downstream
ABE-0008009murPCDSforward25466732548097Downstream
ABE-0008012yfeWCDSforward25481022549406Downstream
ABE-0285518repeat_regionforward25494662549563Downstream
ABE-0008015yfeXCDScomplement25496462550545Matches
ABE-0008017yfeYCDScomplement25506412551216Upstream
ABE-0008023yfeZCDScomplement25512772551726Upstream
ABE-0008028ypeACDScomplement25517132552138Upstream
ABE-0008032amiACDSforward25523522553221Upstream
ABE-0008034hemFCDSforward25532252554124Upstream
ABE-0008036eutRCDScomplement25541302555182Upstream
ABE-0285519repeat_regionforward25551922555215Upstream
ABE-0008039eutKCDScomplement25552282555728Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.