Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008156 (purC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008156 showshow history
Names
purC ade JW2461 ECK2472 adeg b2476
Product
phosphoribosylaminoimidazole-succinocarboxamide synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2596905 2597618 714 238
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000895
EnteroFam0008156: Trusted threshold=696.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013816 (IPR013816 (DEPRECATED) ATP-grasp fold, subdomain 2) Apr 2008
Automated Process Approved IPR001636 (IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase) Apr 2008
Automated Process Approved IPR028923 (IPR028923 SAICAR synthetase/ADE2, N-terminal) Jul 2018
Automated Process Approved PF01259 (PF01259 SAICAR synthetase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006164 purine nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001636
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001636
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name purC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2461 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ade Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK2472 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym adeg Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b2476 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphoribosylaminoimidazole-succinocarboxamide synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name phosphoribosylaminoimidazole-succinocarboxamide synthetase (SAICAR synthetase) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name phosphoribosylaminoimidazole-succinocarboxamide synthetase = SAICAR synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008156: Trusted threshold=696.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000895
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase Protein Sequence Similarity - InterPro Domain: IPR001636
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01259 SAICAR synthetase Protein Sequence Similarity - PFAM Model Name: PF01259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013816 (DEPRECATED) ATP-grasp fold, subdomain 2 Protein Sequence Similarity - InterPro Domain: IPR013816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR028923 SAICAR synthetase/ADE2, N-terminal Protein Sequence Similarity - InterPro Domain: IPR028923
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 6.3.2.6 Published Annotation - Swiss-Prot Accession Number: P0A7D7 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.1 (metabolism; building block biosynthesis; nucleotide; purine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A7D7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A7D7 Published Annotation - Swiss-Prot Accession Number: P0A7D7 Jan 2006
Automated Process Approved db xref ASAP:ABE-0008156 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946957 Published Annotation - Entrez Gene Database ID: 946957
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG10791 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788820 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of dnaK ASAP:52:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note phosphoribosylaminoimidazole-succinocarboxamide synthetase = SAICAR synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006164 - purine nucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75529.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006164 purine nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001636
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004639 phosphoribosylaminoimidazolesuccinocarboxamide synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001636
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000895 purC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001389 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000795 purC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000825 purC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000673 purC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001277 purC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003495 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004522 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003215 purC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000869 purC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003314 purC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0003996 purC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007964 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018360 purC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001162 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003909 purC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303784 purC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002732 purC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001113 purC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003071 purC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006788 purC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002510 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008753 purC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002430 purC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001829 purC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006749 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006781 purC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007919 purC pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079148 purC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002819 purC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003311 purC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006761 purC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008534 purC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002873 purC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007191 purC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000815 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007041 purC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005562 purC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005036 purC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006630 purC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008538 purC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006279 purC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006330 purC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008189 purC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007987 purC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006669 purC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006586 purC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008114 purC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027442 purC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008066 purC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007280 purC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003109 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002332 purC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002546 purC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003113 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002917 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002906 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002832 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177007 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002808 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002622 purC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133357 purC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003662 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002811 purC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002577 purC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003785 purC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002819 purC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001144 purC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005619 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002162 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003527 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002133 purC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001876 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002885 purC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001256 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010618 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001063 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288003 purC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005993 purC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061510 purC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000684 purC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000317 purC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001135 purC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005821 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143139 purC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004018 purC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006799 purC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000409 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002914 purC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007114 purC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007998 purC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007593 purC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006034 purC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007108 purC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006992 purC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007075 purC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006457 purC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006232 purC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007042 purC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008094 purC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000383 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000382 purC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000468 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007288 purC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004894 purC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006796 purC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007428 purC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110739 purC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082084 purC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003055 purC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097908 purC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006787 purC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004289 purC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006089 purC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002194 purC CDS
Person Approved Go view Shigella boydii 227 ADV-0002750 purC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008256 purC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004400 purC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003054 purC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073819 purC CDS
Person Approved Go view Shigella flexneri 301 ABT-0088776 purC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002696 purC CDS
Person Approved Go view Shigella sonnei 046 ADD-0002793 purC CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000503 purC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004750 purC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000803 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003409 purC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001484 purC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003189 purC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002859 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240790 purC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007254 purC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002717 purC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006313 purC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000455 purC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125574 purC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007589 purC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007054 purC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003108 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005019 purC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005715 purC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031098 purC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008706 purC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001595 purC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002598 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005551 purC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005208 purC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002876 purC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003454 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001589 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017889 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001901 purC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20819mutantTn5 InsertionRequest the StrainABE-0008156purCpurC::Tn5KAN-2 at position 61 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2591905 to 2602618
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008142dapECDSforward25916072592734Downstream
ABE-0285068ypfNCDSforward25927622592962Downstream
ABE-0285523repeat_regionforward25929782593060Downstream
ABE-0008145ypfHCDScomplement25930722593770Downstream
ABE-0008150tmcACDScomplement25938442595859Downstream
ABE-0008153ypfJCDScomplement25958742596737Downstream
ABE-0008156purCCDScomplement25969052597618Matches
ABE-0285524repeat_regionforward25976732597718Upstream
ABE-0008161bamCCDScomplement25978312598865Upstream
ABE-0008163dapACDScomplement25988822599760Upstream
ABE-0008168gcvRCDSforward25999062600478Upstream
ABE-0008171bcpCDSforward26004782600948Upstream
ABE-0008179hyfACDSforward26012012601818Upstream
ABE-0008181hyfBCDSforward26018182603836Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.