Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008171 (bcp) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008171 showshow history
Names
bcp JW2465 ECK2476 b2480
Product
thiol peroxidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2600478 2600948 471 157
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000899
EnteroFam0008171: Trusted threshold=451.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Apr 2008
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Apr 2008
Automated Process Approved IPR000866 (IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant) Apr 2008
Automated Process Approved IPR036249 (IPR036249 Thioredoxin-like superfamily) Jul 2018
Automated Process Approved PF00578 (PF00578 AhpC/TSA family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000866
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000866
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016209 antioxidant activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000866
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name bcp Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2465 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2476 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2480 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product thiol peroxidase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Automated Process Approved alternate product name peroxiredoxin; thiol peroxidase, thioredoxin-dependent Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name bacterioferritin comigratory protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008171: Trusted threshold=451.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000899
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036249 Thioredoxin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036249
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant Protein Sequence Similarity - InterPro Domain: IPR000866
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00578 AhpC/TSA family Protein Sequence Similarity - PFAM Model Name: PF00578
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.11.1.15 Published Annotation - Swiss-Prot Accession Number: P0AE52 Feb 2006
Person Uncurated MultiFun 5.6.2 (cell processes; protection; detoxification (xenobiotic metabolism)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788825 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AE52 Published Annotation - Swiss-Prot Accession Number: P0AE52 Jan 2006
Automated Process Approved db xref GeneID:946949 Published Annotation - Entrez Gene Database ID: 946949
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG10108 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008171 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AE52 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function phenotype; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note bacterioferritin comigratory protein; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006805 - xenobiotic metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75533.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000866
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016209 antioxidant activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000866
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000866
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000899 bcp CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001955 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000590 bcp CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000684 bcp CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000671 bcp CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001276 bcp CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004527 CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104203 bcp CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003219 bcp CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000865 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003318 bcp CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004000 bcp CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007968 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018364 bcp CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001158 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003913 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303798 bcp CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002736 bcp CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001109 bcp CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003067 bcp CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006784 bcp CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002514 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008748 bcp CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002434 bcp CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001825 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006745 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006785 bcp CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007915 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079152 bcp CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002823 bcp CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003315 bcp CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006757 bcp CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008538 bcp CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002877 bcp CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007196 bcp CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000820 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007045 bcp CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005566 bcp CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005040 bcp CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006626 bcp CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008542 bcp CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006275 bcp CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006334 bcp CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008193 bcp CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007991 bcp CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006673 bcp CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006590 bcp CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008118 bcp CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027446 bcp CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008070 bcp CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007285 bcp CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003105 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002336 bcp CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002550 bcp CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003109 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002921 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002902 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002836 bcp CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177011 bcp CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002812 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002626 bcp CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133361 bcp CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003667 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002815 bcp CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002581 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003789 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002823 bcp CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001148 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005614 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002166 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003531 bcp CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002138 bcp CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001872 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002889 bcp CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001252 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010622 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001059 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288007 bcp CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005997 bcp CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061506 bcp CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000689 bcp CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003646 bcp CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001131 bcp CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005815 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143153 bcp CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004023 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006803 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000405 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002918 bcp CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007118 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008014 bcp CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007607 bcp CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006030 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007112 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006996 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007071 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006461 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006236 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007046 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008090 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000379 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000378 bcp CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000464 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007292 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004890 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006801 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007423 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110755 bcp CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082080 bcp CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003059 bcp CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097924 bcp CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006783 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004285 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006093 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002190 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265456 bcp CDS
Person Approved Go view Shigella boydii 227 ADV-0002754 bcp CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008260 bcp CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004404 bcp CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003059 bcp CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073824 bcp CDS
Person Approved Go view Shigella flexneri 301 ABT-0088780 bcp CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002700 bcp CDS
Person Approved Go view Shigella sonnei 046 ADD-0002797 bcp CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002236 VC2160 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004761 bcp CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000799 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003397 bcp CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001488 bcp CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002513 bcp CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002855 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240796 bcp CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007249 bcp CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002722 bcp CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006318 bcp CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000450 bcp CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125588 bcp CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007584 bcp CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007049 bcp CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005024 bcp CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005720 bcp CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031093 bcp CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008701 bcp CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001590 bcp CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002603 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005546 bcp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005204 bcp CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002880 bcp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003458 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001585 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017908 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001905 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20824mutantTn5 InsertionRequest the StrainABE-0008171bcpbcp::Tn5KAN-2 at position 281 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2595478 to 2605948
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008150tmcACDScomplement25938442595859Upstream
ABE-0008153ypfJCDScomplement25958742596737Upstream
ABE-0008156purCCDScomplement25969052597618Upstream
ABE-0285524repeat_regionforward25976732597718Upstream
ABE-0008161bamCCDScomplement25978312598865Upstream
ABE-0008163dapACDScomplement25988822599760Upstream
ABE-0008168gcvRCDSforward25999062600478Overlaps Upstream
ABE-0008171bcpCDSforward26004782600948Matches
ABE-0008179hyfACDSforward26012012601818Downstream
ABE-0008181hyfBCDSforward26018182603836Downstream
ABE-0008183hyfCCDSforward26038472604794Downstream
ABE-0008185hyfDCDSforward26048112606250Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.