Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008200 (hyfJ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008200 showshow history
Names
hyfJ JW2475 ECK2486 b2490
Product
putative hydrogenase 4 assembly protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2611457 2611870 414 138
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010005 (IPR010005 Formate hydrogenlyase maturation HycH) Apr 2008
Automated Process Approved PF07450 (PF07450 Formate hydrogenlyase maturation protein HycH) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006412 translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hyfJ Published Annotation - Swiss-Prot Accession Number: P77453 Aug 2002
Person Approved synonym ECK2486 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2475 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2490 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative hydrogenase 4 assembly protein Published Annotation - EcoCyc Accession Number: G7307
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name predicted processing element hydrogenase 4 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative protein processing element; hydrogenase 4 component J Published Annotation - Swiss-Prot Accession Number: P77453 Jan 2006
Person Uncurated alternate product name putative protein processing element for hydrogenase 4 Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR010005 Formate hydrogenlyase maturation HycH Protein Sequence Similarity - InterPro Domain: IPR010005
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07450 Formate hydrogenlyase maturation protein HycH Protein Sequence Similarity - PFAM Model Name: PF07450
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.-.-.- Published Annotation - Swiss-Prot Accession Number: P77453 Feb 2006
Person Uncurated MultiFun 2.3 (information transfer; protein related) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG14218 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77453 Published Annotation - Swiss-Prot Accession Number: P77453 Jan 2005
Automated Process Approved db xref GI:87082116 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77453 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947713 Published Annotation - Entrez Gene Database ID: 947713
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0008200 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative factor; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006412 - translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75543.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006412 translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002658 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003896 hyfJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004866 hyfJ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004107 hyfJ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003673 hyfJ CDS
Ortholog
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007631 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015745 hyfJ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002704 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006773 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008738 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006733 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006799 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009755 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002839 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003326 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006746 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008551 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007206 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000830 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007055 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005576 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005050 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006616 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008552 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006265 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006344 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008203 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008001 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006683 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006600 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008128 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027456 hyfJ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007295 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002346 hyfJ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002560 hyfJ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002892 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002823 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002636 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133371 hyfJ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003677 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003156 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061484 hyfJ CDS
Person Approved Go view Shigella boydii 227 ADV-0002771 hyfJ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008270 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004414 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003069 hyfJ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073835 hyfJ CDS
Person Approved Go view Shigella flexneri 301 ABT-0088790 hyfJ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002710 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002807 hyfJ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001144 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008084 hyfJ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002233 hyfJ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001329 hyfJ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003603 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2606457 to 2616870
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008188hyfECDSforward26062622606912Upstream
ABE-0008191hyfFCDSforward26069172608497Upstream
ABE-0008194hyfGCDSforward26084872610154Upstream
ABE-0008196hyfHCDSforward26101642610709Upstream
ABE-0008198hyfICDSforward26107062611464Overlaps Upstream
ABE-0008200hyfJCDSforward26114572611870Matches
ABE-0008204hyfRCDSforward26119002613912Downstream
ABE-0008206focBCDSforward26139342614782Downstream
ABE-0008208yfgOCDScomplement26148202615881Downstream
ABE-0008212bepACDSforward26160942617557Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.