Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008219 (uraA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008219 showshow history
Names
uraA JW2482 ECK2493 b2497
Product
uracil transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2618871 2620160 1290 430
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006042 (IPR006042 Xanthine/uracil permease) Apr 2008
Automated Process Approved IPR006043 (IPR006043 Xanthine/uracil/vitamin C permease) Apr 2008
Automated Process Approved IPR029935 (IPR029935 (DEPRECATED) Uracil permease) Jul 2018
Automated Process Approved PF00860 (PF00860 Permease family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0015857 uracil transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR029935
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043, IPR006042
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR029935
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015210 uracil transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR029935
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name uraA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2493 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2482 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2497 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product uracil transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name uracil transport protein (NCS2 family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name uracil transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name uracil permease Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR006042 Xanthine/uracil permease Protein Sequence Similarity - InterPro Domain: IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029935 (DEPRECATED) Uracil permease Protein Sequence Similarity - InterPro Domain: IPR029935
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00860 Permease family Protein Sequence Similarity - PFAM Model Name: PF00860
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006043 Xanthine/uracil/vitamin C permease Protein Sequence Similarity - InterPro Domain: IPR006043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 4.2.A.40 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Nucleobase:Cation Symporter-2 (NCS2) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.185 (transport; substrate; uracil) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008219 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12129 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AGM7 Published Annotation - Swiss-Prot Accession Number: P0AGM7 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGM7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788843 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946978 Published Annotation - Entrez Gene Database ID: 946978
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function transport; Transport of small molecules: Nucleosides, purines, pyrimidines Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note uracil transport; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75550.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0015857 uracil transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR029935
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043, IPR006042
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR029935
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015210 uracil transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR029935
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006043
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001956 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002073 uraA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001788 uraA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002205 uraA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000688 uraA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003488 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004541 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003224 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000775 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003327 uraA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004008 uraA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007973 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018369 uraA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001154 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003922 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303813 uraA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002743 uraA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001104 uraA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003062 uraA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006766 uraA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002519 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008731 uraA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002439 uraA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001820 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006724 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006806 uraA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009748 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079158 uraA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002846 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003333 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006739 uraA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008558 uraA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002882 uraA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007214 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000837 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007062 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005583 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005057 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006609 uraA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008559 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006258 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006351 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008210 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008008 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006690 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006607 uraA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008135 uraA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027463 uraA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008075 uraA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007303 uraA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003100 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002353 uraA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002567 uraA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003090 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002940 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002884 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002842 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177016 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002831 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002643 uraA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133378 uraA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003684 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002821 uraA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002586 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003799 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002829 uraA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001153 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005609 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002180 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003545 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002153 uraA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001856 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002905 uraA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001236 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010636 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001046 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288026 uraA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006010 uraA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061502 uraA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000687 uraA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000313 uraA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001127 uraA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005810 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001158 uraA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006811 uraA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000397 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002926 uraA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007126 uraA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008036 uraA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007626 uraA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006021 uraA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007118 uraA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007002 uraA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007062 uraA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006469 uraA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006245 uraA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007054 uraA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008082 uraA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000371 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000370 uraA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000455 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007298 uraA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004882 uraA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006810 uraA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007414 uraA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110768 uraA CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082072 uraA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003066 uraA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097937 uraA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006775 uraA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004277 uraA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006099 uraA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002173 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266489 uraA CDS
Person Approved Go view Shigella boydii 227 ADV-0002778 uraA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008279 uraA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004423 uraA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003076 uraA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073843 uraA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088796 uraA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002717 uraA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002816 uraA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002466 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002247 VC2171 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004774 uraA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000794 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003380 uraA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001493 uraA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002518 uraA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002850 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005195 uraA CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002888 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003467 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001576 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017948 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001917 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20827mutantTn5 InsertionRequest the StrainABE-0008219uraAuraA::Tn5KAN-2 at position 171 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2613871 to 2625160
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008204hyfRCDSforward26119002613912Downstream
ABE-0008206focBCDSforward26139342614782Downstream
ABE-0008208yfgOCDScomplement26148202615881Downstream
ABE-0008212bepACDSforward26160942617557Downstream
ABE-0008214yfgDCDSforward26175782617937Downstream
ABE-0285525repeat_regionforward26179682618004Downstream
ABE-0008217hdaCDScomplement26180752618776Downstream
ABE-0008219uraACDScomplement26188712620160Matches
ABE-0008224uppCDScomplement26202462620872Upstream
ABE-0008230purMCDSforward26211972622234Upstream
ABE-0008232purNCDSforward26222342622872Upstream
ABE-0008235ppkCDSforward26230442625110Upstream
ABE-0008238ppxCDSforward26251152626656Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.