Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008224 (upp) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008224 showshow history
Names
upp JW2483 ECK2494 uraP b2498
Product
uracil phosphoribosyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2620246 2620872 627 209
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000903
EnteroFam0008224: Trusted threshold=611.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000836 (IPR000836 Phosphoribosyltransferase domain) Apr 2008
Automated Process Approved IPR005765 (IPR005765 Uracil phosphoribosyl transferase) Apr 2008
Automated Process Approved IPR029057 (IPR029057 Phosphoribosyltransferase-like) Jul 2018
Automated Process Approved PF14681 (PF14681 Uracil phosphoribosyltransferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006223 uracil salvage GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004845 uracil phosphoribosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name upp Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym uraP Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW2483 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2494 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2498 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product uracil phosphoribosyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name uracil phosphoribosyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008224: Trusted threshold=611.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000903
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005765 Uracil phosphoribosyl transferase Protein Sequence Similarity - InterPro Domain: IPR005765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000836 Phosphoribosyltransferase domain Protein Sequence Similarity - InterPro Domain: IPR000836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF14681 Uracil phosphoribosyltransferase Protein Sequence Similarity - PFAM Model Name: PF14681
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029057 Phosphoribosyltransferase-like Protein Sequence Similarity - InterPro Domain: IPR029057
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.4.2.9 Published Annotation - Swiss-Prot Accession Number: P0A8F0 Feb 2006
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11332 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082118 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A8F0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A8F0 Published Annotation - Swiss-Prot Accession Number: P0A8F0 Jan 2006
Automated Process Approved db xref ASAP:ABE-0008224 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946979 Published Annotation - Entrez Gene Database ID: 946979
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Salvage of nucleosides and nucleotides Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75551.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006223 uracil salvage GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000836
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004845 uracil phosphoribosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000903 upp CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001395 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000693 upp CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000832 upp CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002063 upp CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000729 upp CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003487 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004542 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003225 upp CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000774 upp CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003328 upp CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004009 upp CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007974 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018371 upp CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001153 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003923 upp CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303818 upp CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002744 upp CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001103 upp CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003061 upp CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006765 upp CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002520 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008730 upp CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002440 upp CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001819 upp CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006723 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006807 upp CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009747 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079159 upp CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002847 upp CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003334 upp CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006738 upp CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008559 upp CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002883 upp CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007215 upp CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000838 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007063 upp CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005584 upp CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005058 upp CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006608 upp CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008560 upp CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006257 upp CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006352 upp CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008211 upp CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008009 upp CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006691 upp CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006608 upp CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008136 upp CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027464 upp CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008076 upp CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007304 upp CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003099 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002354 upp CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002568 upp CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003089 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002941 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002883 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002843 upp CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177017 upp CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002832 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002644 upp CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133379 upp CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003685 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002822 upp CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002587 upp CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003800 upp CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002830 upp CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001154 upp CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005608 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002181 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003546 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002154 upp CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001854 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002906 upp CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001235 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010637 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001045 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288028 upp CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006011 upp CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061501 upp CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000693 upp CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001539 upp CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001126 upp CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005809 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143178 upp CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001159 upp CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006812 upp CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000396 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002927 upp CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007127 upp CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008041 upp CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007630 upp CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006020 upp CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007119 upp CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007003 upp CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007061 upp CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006470 upp CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006246 upp CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007055 upp CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008081 upp CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000370 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000369 upp CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000454 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007299 upp CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004881 upp CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006811 upp CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007413 upp CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110772 upp CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082071 upp CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003067 upp CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097940 upp CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006774 upp CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004276 upp CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006100 upp CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002172 upp CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266364 upp CDS
Person Approved Go view Shigella boydii 227 ADV-0002779 upp CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008280 upp CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004424 upp CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003077 upp CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073844 upp CDS
Person Approved Go view Shigella flexneri 301 ABT-0088797 upp CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002718 upp CDS
Person Approved Go view Shigella sonnei 046 ADD-0002817 upp CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002318 VC2225 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004778 upp CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000793 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003378 upp CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001494 upp CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002519 upp CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002849 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240815 upp CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007240 upp CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002733 upp CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006326 upp CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000666 upp CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124779 upp CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004313 upp CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006093 upp CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002462 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006360 upp CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005728 upp CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031083 upp CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007195 upp CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001578 upp CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002613 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005539 upp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005194 upp CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002889 upp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003468 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001575 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017951 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001918 upp CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20828mutantTn5 InsertionRequest the StrainABE-0008224uppupp::Tn5KAN-2 at position 334 in Plus orientation ,+ pKD460Blattner Laboratory
FB20829mutantTn5 InsertionRequest the StrainABE-0008224uppupp::Tn5KAN-2 at position 334 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2615246 to 2625872
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008208yfgOCDScomplement26148202615881Downstream
ABE-0008212bepACDSforward26160942617557Downstream
ABE-0008214yfgDCDSforward26175782617937Downstream
ABE-0285525repeat_regionforward26179682618004Downstream
ABE-0008217hdaCDScomplement26180752618776Downstream
ABE-0008219uraACDScomplement26188712620160Downstream
ABE-0008224uppCDScomplement26202462620872Matches
ABE-0008230purMCDSforward26211972622234Upstream
ABE-0008232purNCDSforward26222342622872Upstream
ABE-0008235ppkCDSforward26230442625110Upstream
ABE-0008238ppxCDSforward26251152626656Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.