Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008230 (purM) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008230 showshow history
Names
purM purI JW2484 ECK2495 purG b2499
Product
phosphoribosylaminoimidazole synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2621197 2622234 1038 346
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000904
EnteroFam0008230: Trusted threshold=983.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004733 (IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase) Apr 2008
Automated Process Approved IPR010918 (IPR010918 PurM-like, C-terminal domain) Apr 2008
Automated Process Approved IPR000728 (IPR000728 (DEPRECATED) AIR synthase related protein, N-terminal domain) Apr 2008
Automated Process Approved IPR016188 (IPR016188 PurM-like, N-terminal domain) Jul 2018
Automated Process Approved IPR036921 (IPR036921 PurM-like, N-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036676 (IPR036676 PurM-like, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF00586 (PF00586 AIR synthase related protein, N-terminal domain) Jul 2018
Automated Process Approved PF02769 (PF02769 AIR synthase related protein, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004733
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004733
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000728
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004733
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name purM Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym purG Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW2484 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2495 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym purI Published Annotation - GenBank Accession Number: AL590842
Reference: Yersinia pestis CO92 		Sep 2007
Person Approved locus tag b2499 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphoribosylaminoimidazole synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name phosphoribosylaminoimidazole synthetase (AIR synthetase) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name phosphoribosylaminoimidazole synthetase = AIR synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008230: Trusted threshold=983.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000904
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase Protein Sequence Similarity - InterPro Domain: IPR004733
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010918 PurM-like, C-terminal domain Protein Sequence Similarity - InterPro Domain: IPR010918
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000728 (DEPRECATED) AIR synthase related protein, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR000728
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02769 AIR synthase related protein, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02769
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00586 AIR synthase related protein, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00586
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036676 PurM-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036676
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036921 PurM-like, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036921
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016188 PurM-like, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR016188
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 6.3.3.1 Published Annotation - Swiss-Prot Accession Number: P08178 Feb 2006
Person Uncurated MultiFun 1.5.2.1 (metabolism; building block biosynthesis; nucleotide; purine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P08178 Published Annotation - Swiss-Prot Accession Number: P08178 Jan 2005
Automated Process Approved db xref GeneID:946975 Published Annotation - Entrez Gene Database ID: 946975
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08178 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008230 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788845 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10798 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note phosphoribosylaminoimidazole synthetase = AIR synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006164 - purine nucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75552.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004733
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004733
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004733
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000728
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000904 purM CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001396 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000712 purM CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000517 purM CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000275 purM CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000793 purM CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003486 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004544 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003226 purM CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000773 purM CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003330 purM CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004011 purM CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007975 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018373 purM CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001152 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003927 purM CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303820 purM CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002745 purM CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001101 purM CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003059 purM CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006763 purM CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002521 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008728 purM CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002441 purM CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001817 purM CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006722 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006808 purM CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009745 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079161 purM CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002849 purM CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003335 purM CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006736 purM CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008560 purM CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002884 purM CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007216 purM CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000839 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007065 purM CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005585 purM CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005060 purM CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006606 purM CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008562 purM CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006255 purM CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006354 purM CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008212 purM CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008011 purM CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006693 purM CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006610 purM CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008138 purM CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027465 purM CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008078 purM CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007305 purM CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003098 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002355 purM CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002569 purM CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003087 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002943 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002881 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002845 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177018 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002833 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002646 purM CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133380 purM CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003686 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002823 purM CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002588 purM CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003802 purM CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002833 purM CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001157 purM CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005607 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002182 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003547 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002155 purM CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001853 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002907 purM CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001234 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010638 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001044 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288029 purM CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006012 purM CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061500 purM CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000691 purM CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000312 purM CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001125 purM CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005808 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143180 purM CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001730 purM CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006814 purM CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000395 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002928 purM CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007129 purM CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008043 purM CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007632 purM CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006019 purM CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007121 purM CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007005 purM CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007059 purM CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006471 purM CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006247 purM CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007057 purM CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008079 purM CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000369 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000368 purM CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000451 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007301 purM CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004880 purM CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006813 purM CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007411 purM CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110775 purM CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082070 purM CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003069 purM CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097949 purM CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006773 purM CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004274 purM CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006102 purM CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002170 purM CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266365 purM CDS
Person Approved Go view Shigella boydii 227 ADV-0002780 purM CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008281 purM CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004426 purM CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003078 purM CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073845 purM CDS
Person Approved Go view Shigella flexneri 301 ABT-0088798 purM CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002719 purM CDS
Person Approved Go view Shigella sonnei 046 ADD-0002818 purM CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002319 VC2226 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000505 purM CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004781 purM CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000792 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003375 purI CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001495 purI_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002520 purM CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002848 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240816 purM CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007239 purM CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002734 purM CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006327 purM CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000667 purM CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124781 purM CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004314 purM CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006092 purM CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002463 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006361 purM CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005729 purM CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031082 purM CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007194 purM CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001577 purM CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002614 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005538 purM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005193 purM CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002890 purM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003469 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001574 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017961 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001920 purM CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2616197 to 2627234
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008212bepACDSforward26160942617557Upstream
ABE-0008214yfgDCDSforward26175782617937Upstream
ABE-0285525repeat_regionforward26179682618004Upstream
ABE-0008217hdaCDScomplement26180752618776Upstream
ABE-0008219uraACDScomplement26188712620160Upstream
ABE-0008224uppCDScomplement26202462620872Upstream
ABE-0008230purMCDSforward26211972622234Matches
ABE-0008232purNCDSforward26222342622872Overlaps Downstream
ABE-0008235ppkCDSforward26230442625110Downstream
ABE-0008238ppxCDSforward26251152626656Downstream
ABE-0008240pdeFCDScomplement26266952628938Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.