Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008232 (purN) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008232 showshow history
Names
purN ade JW2485 ECK2496 adeC b2500
Product
phosphoribosylglycinamide formyltransferase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2622234 2622872 639 213
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000905
EnteroFam0008232: Trusted threshold=531.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002376 (IPR002376 Formyl transferase, N-terminal) Apr 2008
Automated Process Approved IPR001555 (IPR001555 Phosphoribosylglycinamide formyltransferase, active site) Apr 2008
Automated Process Approved IPR004607 (IPR004607 Phosphoribosylglycinamide formyltransferase) Apr 2008
Automated Process Approved IPR002035 (IPR002035 von Willebrand factor, type A) Apr 2008
Automated Process Approved IPR036477 (IPR036477 Formyl transferase, N-terminal domain superfamily) Jul 2018
Automated Process Approved PF00551 (PF00551 Formyl transferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004607
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001555
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004644 phosphoribosylglycinamide formyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004607
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001555
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name purN Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2485 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ade Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK2496 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym adeC Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b2500 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphoribosylglycinamide formyltransferase 1 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphoribosylglycinamide formyltransferase 1 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008232: Trusted threshold=531.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000905
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036477 Formyl transferase, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036477
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001555 Phosphoribosylglycinamide formyltransferase, active site Protein Sequence Similarity - InterPro Domain: IPR001555
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002035 von Willebrand factor, type A Protein Sequence Similarity - InterPro Domain: IPR002035
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002376 Formyl transferase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004607 Phosphoribosylglycinamide formyltransferase Protein Sequence Similarity - InterPro Domain: IPR004607
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00551 Formyl transferase Protein Sequence Similarity - PFAM Model Name: PF00551
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 2.1.2.- Published Annotation - Database Name: EC2GO: GO:0016742
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.1.2.2 Published Annotation - Swiss-Prot Accession Number: P08179 Feb 2006
Person Uncurated MultiFun 1.5.2.1 (metabolism; building block biosynthesis; nucleotide; purine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10799 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P08179 Published Annotation - Swiss-Prot Accession Number: P08179 Jan 2005
Automated Process Approved db xref GeneID:946973 Published Annotation - Entrez Gene Database ID: 946973
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788846 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08179 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008232 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006164 - purine nucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75553.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001555
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004607
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004644 phosphoribosylglycinamide formyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004607
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001555
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000905 purN CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001397 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000922 purN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000954 purN CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000276 purN CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000687 purN CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003485 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004545 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003227 purN CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000772 purN CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003331 purN CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004012 purN CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007976 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018374 purN CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001151 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0003928 purN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303823 purN CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002746 purN CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001100 purN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003058 purN CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006762 purN CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002522 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008727 purN CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002442 purN CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001816 purN CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006721 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006809 purN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009744 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079162 purN CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002850 purN CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003336 purN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006735 purN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008561 purN CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002885 purN CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007217 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000840 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007066 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005586 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005061 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006605 purN CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008563 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006254 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006355 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008213 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008012 purN CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006694 purN CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006611 purN CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008139 purN CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027466 purN CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008079 purN CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007306 purN CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003097 purN CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002356 purN CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002570 purN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003086 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002944 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002880 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002846 purN CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177019 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002834 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002647 purN CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133381 purN CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003687 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002824 purN CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002589 purN CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003803 purN CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002834 purN CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001158 purN CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005606 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002183 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003548 purN CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002156 purN CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001852 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002908 purN CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001233 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010639 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001043 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288030 purN CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006013 purN CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061499 purN CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000692 purN CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000311 purN CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001124 purN CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005807 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143182 purN CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001729 purN CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006815 purN CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000394 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002929 purN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007130 purN CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008046 purN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007635 purN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006018 purN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007122 purN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007006 purN CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007058 purN CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006472 purN CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006248 purN CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007058 purN CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008078 purN CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000368 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000367 purN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000450 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007302 purN CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004879 purN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006814 purN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007410 purN CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110777 purN CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082069 purN CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003070 purN CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097952 purN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006772 purN CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004273 purN CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006103 purN CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002169 purN CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266366 purN CDS
Person Approved Go view Shigella boydii 227 ADV-0002781 purN CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008282 purN CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004427 purN CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003079 purN CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073846 purN CDS
Person Approved Go view Shigella flexneri 301 ABT-0088799 purN CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002720 purN CDS
Person Approved Go view Shigella sonnei 046 ADD-0002819 purN CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002320 VC2227 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004784 purN CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000791 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003372 purN CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001496 purN CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002521 purN CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003692 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240817 purN CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007238 purN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002735 purN CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006328 purN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000668 purN CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124783 purN CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004315 purN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006091 purN CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002464 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006362 purN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005730 purN CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031081 purN CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007193 purN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001576 purN CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002615 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005537 purN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005192 purN CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002891 purN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003470 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001573 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017966 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001921 purN CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2617234 to 2627872
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008212bepACDSforward26160942617557Upstream
ABE-0008214yfgDCDSforward26175782617937Upstream
ABE-0285525repeat_regionforward26179682618004Upstream
ABE-0008217hdaCDScomplement26180752618776Upstream
ABE-0008219uraACDScomplement26188712620160Upstream
ABE-0008224uppCDScomplement26202462620872Upstream
ABE-0008230purMCDSforward26211972622234Overlaps Upstream
ABE-0008232purNCDSforward26222342622872Matches
ABE-0008235ppkCDSforward26230442625110Downstream
ABE-0008238ppxCDSforward26251152626656Downstream
ABE-0008240pdeFCDScomplement26266952628938Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.