Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008254 (guaA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008254 showshow history
Names
guaA JW2491 ECK2503 b2507
Product
GMP synthetase (glutamine aminotransferase)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2630958 2632535 1578 526
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000908
EnteroFam0008254: Trusted threshold=1571.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001674 (IPR001674 GMP synthase, C-terminal) Apr 2008
Automated Process Approved IPR004739 (IPR004739 GMP synthase, glutamine amidotransferase) Apr 2008
Automated Process Approved IPR006220 (IPR006220 (DEPRECATED) Anthranilate synthase component II/delta crystallin) Apr 2008
Automated Process Approved IPR004506 (IPR004506 tRNA-specific 2-thiouridylase) Apr 2008
Automated Process Approved IPR012998 (IPR012998 (DEPRECATED) Glutamine amidotransferase, class I, active site) Apr 2008
Automated Process Approved IPR001317 (IPR001317 (DEPRECATED) Carbamoyl-phosphate synthase, GATase domain) Apr 2008
Automated Process Approved IPR011702 (IPR011702 (DEPRECATED) Glutamine amidotransferase superfamily) Apr 2008
Automated Process Approved IPR000991 (IPR000991 (DEPRECATED) Glutamine amidotransferase class-I, C-terminal) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR017926 (IPR017926 Glutamine amidotransferase) Jul 2018
Automated Process Approved IPR022310 (IPR022310 NAD/GMP synthase) Jul 2018
Automated Process Approved IPR029062 (IPR029062 Class I glutamine amidotransferase-like) Jul 2018
Automated Process Approved PF00958 (PF00958 GMP synthase C terminal domain) Jul 2018
Automated Process Approved PF00117 (PF00117 Glutamine amidotransferase class-I) Jul 2018
Automated Process Approved PF02540 (PF02540 NAD synthase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0006177 GMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001674, IPR004739
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006541 glutamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001674, IPR004739
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003922 GMP synthase (glutamine-hydrolyzing) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001674, IPR004739
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name guaA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2491 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2503 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2507 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product GMP synthetase (glutamine aminotransferase) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name GMP synthetase (glutamine-hydrolyzing) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008254: Trusted threshold=1571.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000908
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR012998 (DEPRECATED) Glutamine amidotransferase, class I, active site Protein Sequence Similarity - InterPro Domain: IPR012998
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004506 tRNA-specific 2-thiouridylase Protein Sequence Similarity - InterPro Domain: IPR004506
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001674 GMP synthase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR001674
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00958 GMP synthase C terminal domain Protein Sequence Similarity - PFAM Model Name: PF00958
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004739 GMP synthase, glutamine amidotransferase Protein Sequence Similarity - InterPro Domain: IPR004739
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006220 (DEPRECATED) Anthranilate synthase component II/delta crystallin Protein Sequence Similarity - InterPro Domain: IPR006220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00117 Glutamine amidotransferase class-I Protein Sequence Similarity - PFAM Model Name: PF00117
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017926 Glutamine amidotransferase Protein Sequence Similarity - InterPro Domain: IPR017926
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022310 NAD/GMP synthase Protein Sequence Similarity - InterPro Domain: IPR022310
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029062 Class I glutamine amidotransferase-like Protein Sequence Similarity - InterPro Domain: IPR029062
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000991 (DEPRECATED) Glutamine amidotransferase class-I, C-terminal Protein Sequence Similarity - InterPro Domain: IPR000991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02540 NAD synthase Protein Sequence Similarity - PFAM Model Name: PF02540
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001317 (DEPRECATED) Carbamoyl-phosphate synthase, GATase domain Protein Sequence Similarity - InterPro Domain: IPR001317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011702 (DEPRECATED) Glutamine amidotransferase superfamily Protein Sequence Similarity - InterPro Domain: IPR011702
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 6.3.5.2 Published Annotation - Swiss-Prot Accession Number: P04079 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.1 (metabolism; building block biosynthesis; nucleotide; purine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008254 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P04079 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P04079 Published Annotation - Swiss-Prot Accession Number: P04079 Jan 2005
Automated Process Approved db xref EcoGene:EG10420 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947334 Published Annotation - Entrez Gene Database ID: 947334
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788854 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GMP synthetase (glutamine-hydrolyzing); GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006164 - purine nucleotide biosynthetic process; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75560.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006541 glutamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006177 GMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001674, IPR004739
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001674, IPR004739
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003922 GMP synthase (glutamine-hydrolyzing) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001674, IPR004739
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000908 guaA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001009 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000452 guaA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000199 guaA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000540 guaA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000478 guaA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002275 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001514 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003247 guaA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003335 guaA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004018 guaA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005730 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014499 guaA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003101 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005157 guaA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303883 guaA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002762 guaA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001081 guaA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003048 guaA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006754 guaA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002529 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008718 guaA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002492 guaA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001808 guaA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006712 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006818 guaA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007979 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079170 guaA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002864 guaA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003344 guaA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006727 guaA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008569 guaA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002944 guaA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007225 guaA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000848 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007075 guaA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005595 guaA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005070 guaA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006595 guaA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008571 guaA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006246 guaA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006363 guaA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008222 guaA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008021 guaA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006701 guaA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006620 guaA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008147 guaA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027474 guaA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008087 guaA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007328 guaA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002363 guaA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002577 guaA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003077 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002953 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002871 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002853 guaA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002841 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002655 guaA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133388 guaA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003696 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002833 guaA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000667 guaA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001644 guaA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002842 guaA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001170 guaA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007605 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002197 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003566 guaA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002176 guaA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001835 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002928 guaA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001217 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010657 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000988 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288743 guaA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006027 guaa3 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063497 guaA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001855 guaA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000826 guaA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000491 guaA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008087 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143067 guaA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001480 guaA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006826 guaA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000380 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002941 guaA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007136 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008064 guaA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007652 guaA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006011 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007128 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007012 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007047 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006496 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006272 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007065 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008071 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000358 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000357 guaA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000441 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007308 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004874 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006820 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007404 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110793 guaA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082059 guaA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003080 guaA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0097971 guaA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006765 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004265 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006110 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002099 guaA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266916 guaA CDS
Person Approved Go view Shigella boydii 227 ADV-0002794 guaA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008290 guaA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004436 guaA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003097 guaA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073873 guaA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088807 guaA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002730 guaA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002826 guaA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000832 VC0768 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000275 guaA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003487 guaA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002585 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003238 guaA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001530 guaA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002818 guaA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000356 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240941 guaA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004513 guaA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002783 guaA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006365 guaA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000704 guaA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124951 guaA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004349 guaA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006052 guaA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003986 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006398 guaA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004862 guaA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031036 guaA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007154 guaA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001531 guaA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002656 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005496 guaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005153 guaA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002927 guaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003516 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001519 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0017995 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001927 guaA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2625958 to 2637535
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008238ppxCDSforward26251152626656Downstream
ABE-0008240pdeFCDScomplement26266952628938Downstream
ABE-0008247yfgGCDSforward26292902629481Downstream
ABE-0008250yfgHCDSforward26297922630310Downstream
ABE-0008252yfgICDSforward26303262630865Downstream
ABE-0008254guaACDScomplement26309582632535Matches
ABE-0008257guaBCDScomplement26326042634070Upstream
ABE-0008263xseACDSforward26342322635602Upstream
ABE-0008266yfgJCDScomplement26355992635814Upstream
ABE-0008270derCDScomplement26358842637356Upstream
ABE-0008272bamBCDScomplement26374742638652Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.