Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008278 (hisS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008278 showshow history
Names
hisS JW2498 ECK2510 b2514
Product
histidyl tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2639301 2640575 1275 425
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000914
EnteroFam0008278: Trusted threshold=1197.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004154 (IPR004154 Anticodon-binding) Apr 2008
Automated Process Approved IPR006195 (IPR006195 Aminoacyl-tRNA synthetase, class II) Apr 2008
Automated Process Approved IPR004516 (IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit) Apr 2008
Automated Process Approved IPR002314 (IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)) Apr 2008
Automated Process Approved IPR015805 (IPR015805 (DEPRECATED) Histidyl-tRNA synthetase) Apr 2008
Automated Process Approved IPR015807 (IPR015807 Histidine-tRNA ligase) Apr 2008
Automated Process Approved PF03129 (PF03129 Anticodon binding domain) Jul 2018
Automated Process Approved PF13393 (PF13393 Histidyl-tRNA synthetase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006427 histidyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004821 histidine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name hisS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2498 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2510 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2514 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product histidyl tRNA synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name histidine tRNA synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008278: Trusted threshold=1197.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000914
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR015807 Histidine-tRNA ligase Protein Sequence Similarity - InterPro Domain: IPR015807
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03129 Anticodon binding domain Protein Sequence Similarity - PFAM Model Name: PF03129
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13393 Histidyl-tRNA synthetase Protein Sequence Similarity - PFAM Model Name: PF13393
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006195 Aminoacyl-tRNA synthetase, class II Protein Sequence Similarity - InterPro Domain: IPR006195
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015805 (DEPRECATED) Histidyl-tRNA synthetase Protein Sequence Similarity - InterPro Domain: IPR015805
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004154 Anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR004154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit Protein Sequence Similarity - InterPro Domain: IPR004516
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) Protein Sequence Similarity - InterPro Domain: IPR002314
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 6.1.1.21 Published Annotation - Swiss-Prot Accession Number: P60906 Feb 2006
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10453 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788861 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P60906 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P60906 Published Annotation - Swiss-Prot Accession Number: P60906 Jan 2006
Automated Process Approved db xref ASAP:ABE-0008278 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946989 Published Annotation - Entrez Gene Database ID: 946989
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note histidine tRNA synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75567.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.99
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006427 histidyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004821 histidine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004516
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000914 hisS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001015 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000208 hisS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000256 hisS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000218 hisS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001043 hisS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002265 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001524 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129558 hisS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104993 hisS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104397 hisS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003263 hisS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000735 hisS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003345 hisS CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004030 hisS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005721 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020147 hisS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003110 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005146 hisS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303915 hisS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002772 hisS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001074 hisS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003028 hisS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006746 hisS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002539 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008711 hisS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002501 hisS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001798 hisS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006704 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006825 hisS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007972 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079180 hisS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002871 hisS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003352 hisS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006719 hisS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007724 hisS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002960 hisS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007232 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000855 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007082 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005602 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005077 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006588 hisS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008578 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006239 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006371 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008229 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008028 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006709 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006627 hisS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008154 hisS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027480 hisS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007755 hisS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007335 hisS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003075 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002370 hisS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002584 hisS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003070 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002960 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002864 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002863 hisS CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177042 hisS CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002848 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002665 hisS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133395 hisS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003703 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002843 hisS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000654 hisS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001634 hisS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002853 hisS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001183 hisS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007614 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002208 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003190 hisS CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002185 hisS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001826 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002937 hisS CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001207 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010667 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000978 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288733 hisS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006037 hisS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063508 hisS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001877 hisS CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000831 hisS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002708 hisS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008098 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139875 hisS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001465 hisS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006840 hisS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000371 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002954 hisS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007151 hisS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008132 hisS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007718 hisS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005997 hisS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007141 hisS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007025 hisS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007032 hisS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006510 hisS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006286 hisS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007078 hisS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008057 hisS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000346 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000345 hisS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000425 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007322 hisS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004861 hisS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006834 hisS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007477 hisS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110832 hisS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082046 hisS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003098 hisS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098008 hisS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006751 hisS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007753 hisS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006125 hisS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002085 hisS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266935 hisS CDS
Person Approved Go view Shigella boydii 227 ADV-0002801 hisS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008297 hisS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004443 hisS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003104 hisS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073880 hisS CDS
Person Approved Go view Shigella flexneri 301 ABT-0088814 hisS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002737 hisS CDS
Person Approved Go view Shigella sonnei 046 ADD-0002833 hisS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000824 VC0760 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000100 hisS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005965 hisS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002577 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003208 hisS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001538 hisS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002826 hisS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000348 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240964 hisS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004522 hisS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002791 hisS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006375 hisS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000712 hisS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124989 hisS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004358 hisS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006043 hisS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001706 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006407 hisS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004853 hisS CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031027 hisS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007145 hisS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001522 hisS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002665 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005489 hisS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005144 hisS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002935 hisS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003526 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001509 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001936 hisS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2634301 to 2645575
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008263xseACDSforward26342322635602Downstream
ABE-0008266yfgJCDScomplement26355992635814Downstream
ABE-0008270derCDScomplement26358842637356Downstream
ABE-0008272bamBCDScomplement26374742638652Downstream
ABE-0008274yfgMCDScomplement26386632639283Downstream
ABE-0008278hisSCDScomplement26393012640575Matches
ABE-0285768sroEncRNAcomplement26405952640686Upstream
ABE-0008281ispGCDScomplement26406862641804Upstream
ABE-0008283rodZCDScomplement26418312642844Upstream
ABE-0008287rlmNCDScomplement26431292644283Upstream
ABE-0008291ndkCDScomplement26444332644864Upstream
ABE-0008294pbpCCDScomplement26450132647325Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.