Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008281 (ispG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008281 showshow history
Names
ispG aarC JW2499 ECK2511 gcpE b2515
Product
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2640686 2641804 1119 373
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000915
EnteroFam0008281: Trusted threshold=1074.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011005 (IPR011005 Dihydropteroate synthase-like) Apr 2008
Automated Process Approved IPR004588 (IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type) Apr 2008
Automated Process Approved PF04551 (PF04551 GcpE protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0016114 terpenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004588
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004588
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004588
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ispG Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym gcpE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved synonym aarC Published Annotation - GenBank Accession Number: AL590842
Reference: Yersinia pestis CO92 		Sep 2007
Person Approved synonym JW2499 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2511 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2515 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008281: Trusted threshold=1074.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000915
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF04551 GcpE protein Protein Sequence Similarity - PFAM Model Name: PF04551
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011005 Dihydropteroate synthase-like Protein Sequence Similarity - InterPro Domain: IPR011005
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type Protein Sequence Similarity - InterPro Domain: IPR004588
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.17.7.1 Published Annotation - Swiss-Prot Accession Number: P62620
Reference: Escherichia coli K-12 		Nov 2011
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10370 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008281 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788863 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P62620 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946991 Published Annotation - Entrez Gene Database ID: 946991
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P62620 Published Annotation - Swiss-Prot Accession Number: P62620 Jan 2006
Automated Process Approved protein id AAC75568.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0016114 terpenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004588
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004588
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004588
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000915 ispG CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001016 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000316 ispG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000292 ispG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000215 ispG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000812 ispG CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002264 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001525 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129557 gcpE CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104396 gcpE CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003264 ispG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000734 ispG CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0004970 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005720 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020146 ispG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003111 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005145 ispG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303919 ispG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002773 ispG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001073 ispG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003026 ispG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006744 ispG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002540 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008709 ispG CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002502 ispG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001797 ispG CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006703 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006827 ispG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007970 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079181 ispG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002872 ispG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003353 ispG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006717 ispG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007726 ispG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002962 ispG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007233 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000856 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007084 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005604 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005079 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006586 ispG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008580 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006237 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006373 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008231 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008030 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006711 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006629 ispG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008156 ispG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027481 ispG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007753 ispG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007337 ispG CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003074 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002371 ispG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002585 ispG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003069 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002961 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002863 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002864 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177043 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002849 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002666 ispG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133396 ispG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003704 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002844 gcpE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000653 ispG CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001633 ispG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002854 ispG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001184 ispG CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007615 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002209 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003191 ispG CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002186 ispG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001825 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002938 ispG CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001206 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010668 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000977 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288732 ispG CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006038 ispG CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063509 ispG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001862 ispG CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003060 ispG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002709 ispG CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008099 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139873 gcpE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001464 ispG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006842 ispG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000369 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002955 ispG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007153 ispG CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008136 gcpE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007722 gcpE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005995 ispG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007143 ispG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007027 ispG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007030 ispG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006512 ispG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006288 ispG CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007080 ispG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008055 ispG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000345 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000344 ispG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000423 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007324 ispG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004859 ispG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006836 ispG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007479 ispG CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110835 ispG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082045 ispG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003099 ispG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098011 ispG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006749 ispG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007751 ispG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006127 ispG CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002084 ispG CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266936 ispG CDS
Person Approved Go view Shigella boydii 227 ADV-0002802 ispG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008299 ispG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004445 ispG CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003105 ispG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073881 ispG CDS
Person Approved Go view Shigella flexneri 301 ABT-0088815 ispG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002738 gcpE CDS
Person Approved Go view Shigella sonnei 046 ADD-0002834 ispG CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000823 VC0759 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000099 ispG CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005961 ispG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002576 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003207 aarC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001539 ispG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002827 ispG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000347 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240965 ispG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004523 ispG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002792 ispG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006376 ispG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000713 ispG CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124992 ispG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004359 ispG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006042 ispG CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000769 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006408 ispG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004852 ispG CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031026 ispG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007144 ispG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001521 ispG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002666 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005488 ispG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005143 ispG CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002936 ispG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003527 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001508 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018051 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001937 ispG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2635686 to 2646804
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008266yfgJCDScomplement26355992635814Downstream
ABE-0008270derCDScomplement26358842637356Downstream
ABE-0008272bamBCDScomplement26374742638652Downstream
ABE-0008274yfgMCDScomplement26386632639283Downstream
ABE-0008278hisSCDScomplement26393012640575Downstream
ABE-0285768sroEncRNAcomplement26405952640686Overlaps Downstream
ABE-0008281ispGCDScomplement26406862641804Matches
ABE-0008283rodZCDScomplement26418312642844Upstream
ABE-0008287rlmNCDScomplement26431292644283Upstream
ABE-0008291ndkCDScomplement26444332644864Upstream
ABE-0008294pbpCCDScomplement26450132647325Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.