Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008291 (ndk) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008291 showshow history
Names
ndk JW2502 ECK2514 b2518
Product
multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2644433 2644864 432 144
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000918
EnteroFam0008291: Trusted threshold=388.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001564 (IPR001564 Nucleoside diphosphate kinase) Apr 2008
Automated Process Approved IPR012005 (IPR012005 (DEPRECATED) Nucleoside diphosphate kinase) Apr 2008
Automated Process Approved IPR034907 (IPR034907 Nucleoside diphosphate kinase-like domain) Jul 2018
Automated Process Approved IPR036850 (IPR036850 Nucleoside diphosphate kinase-like domain superfamily) Jul 2018
Automated Process Approved PF00334 (PF00334 Nucleoside diphosphate kinase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006241 CTP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006228 UTP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012005
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009152 purine ribonucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006183 GTP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012005
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004550 nucleoside diphosphate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ndk Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2502 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2514 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2518 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name nucleoside diphosphate kinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008291: Trusted threshold=388.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000918
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001564 Nucleoside diphosphate kinase Protein Sequence Similarity - InterPro Domain: IPR001564
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00334 Nucleoside diphosphate kinase Protein Sequence Similarity - PFAM Model Name: PF00334
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036850 Nucleoside diphosphate kinase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036850
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR034907 Nucleoside diphosphate kinase-like domain Protein Sequence Similarity - InterPro Domain: IPR034907
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012005 (DEPRECATED) Nucleoside diphosphate kinase Protein Sequence Similarity - InterPro Domain: IPR012005
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.4.6 Published Annotation - Swiss-Prot Accession Number: P0A763 Feb 2006
Person Approved MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.7.33 (metabolism; central intermediary metabolism; nucleotide and nucleoside conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.5.2.3 (metabolism; building block biosynthesis; nucleotide; purine ribonucleotide biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10650 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A763 Published Annotation - Swiss-Prot Accession Number: P0A763 Jan 2006
Automated Process Approved db xref GI:1788866 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008291 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945611 Published Annotation - Entrez Gene Database ID: 945611
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A763 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 1.7.33 metabolism; central intermediary metabolism; nucleotide and nucleoside conversions Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 7.2 location of gene products; periplasmic space Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved function 1.5.2.3 metabolism; building block biosynthesis; nucleotide; purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated molecular interaction Interacts with the product of ygfA ASAP:9559:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note nucleoside diphosphate kinase; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO_process: GO:0009152 - purine ribonucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75571.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006241 CTP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012005
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006183 GTP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009152 purine ribonucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0015949 nucleobase-containing small molecule interconversion Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006228 UTP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012005
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004550 nucleoside diphosphate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001564
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000918 ndk CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001018 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000557 ndk CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000617 ndk CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000222 ndk CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000972 ndk CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002260 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001529 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003267 ndk CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000731 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003349 ndk CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004034 ndk CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005715 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020141 ndk CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003115 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005142 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303934 ndk CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002777 ndk CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001069 ndk CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003023 ndk CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006741 ndk CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002543 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008706 ndk CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002505 ndk CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001794 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006700 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006830 ndk CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007967 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079185 ndk CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002875 ndk CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003356 ndk CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006714 ndk CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007729 ndk CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002965 ndk CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007236 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000859 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007087 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005607 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005082 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006583 ndk CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008583 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006234 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006376 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008234 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008033 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006714 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006632 ndk CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008159 ndk CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027484 ndk CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007750 ndk CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007340 ndk CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003071 ndk CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002374 ndk CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002588 ndk CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003065 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002965 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002859 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002867 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177046 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002852 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002669 ndk CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133399 ndk CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003707 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002848 ndk CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000649 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001629 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002857 ndk CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001187 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007620 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002213 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003195 ndk CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002190 ndk CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001821 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002942 ndk CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001202 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010672 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000973 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288728 ndk CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006042 ndk CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063513 ndk CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001865 ndk CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000832 ndk CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002713 ndk CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008103 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139864 ndk CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001460 ndk CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006845 ndk CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000366 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002958 ndk CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007157 ndk CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008143 ndk CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007729 ndk CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005992 ndk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007146 ndk CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007030 ndk CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007027 ndk CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006515 ndk CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006291 ndk CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007083 ndk CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008051 ndk CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000342 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000341 ndk CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000419 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007327 ndk CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004856 ndk CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006839 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007482 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110840 ndk CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082042 ndk CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003103 ndk CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098018 ndk CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006746 ndk CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007748 ndk CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006130 ndk CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002080 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265855 ndk CDS
Person Approved Go view Shigella boydii 227 ADV-0002805 ndk CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008302 ndk CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004448 ndk CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003108 ndk CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073884 ndk CDS
Person Approved Go view Shigella flexneri 301 ABT-0088818 ndk CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002741 ndk CDS
Person Approved Go view Shigella sonnei 046 ADD-0002837 ndk CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000820 VC0756 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000096 ndk CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005947 ndk CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002572 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003191 ndk CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001543 ndk CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002831 ndk CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000343 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240972 ndk CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004527 ndk CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002797 ndk CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006380 ndk CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000717 ndk CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125003 ndk CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004363 ndk CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006038 ndk CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001798 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006412 ndk CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004848 ndk CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031022 ndk CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007140 ndk CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001516 ndk CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002671 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005484 ndk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005139 ndk CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002940 ndk CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003532 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001503 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018067 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001940 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20840mutantTn5 InsertionRequest the StrainABE-0008291ndkndk::Tn5KAN-2 at position 234 in Minus orientation ,- pKD460Blattner Laboratory
FB20841mutantTn5 InsertionRequest the StrainABE-0008291ndkndk::Tn5KAN-2 at position 234 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2639433 to 2649864
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008278hisSCDScomplement26393012640575Downstream
ABE-0285768sroEncRNAcomplement26405952640686Downstream
ABE-0008281ispGCDScomplement26406862641804Downstream
ABE-0008283rodZCDScomplement26418312642844Downstream
ABE-0008287rlmNCDScomplement26431292644283Downstream
ABE-0008291ndkCDScomplement26444332644864Matches
ABE-0008294pbpCCDScomplement26450132647325Upstream
ABE-0008296yfhMCDScomplement26473262652287Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.