Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008294 (pbpC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008294 showshow history
Names
pbpC yfgN JW2503 ECK2515 b2519
Product
penicillin binding protein 1C
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2645013 2647325 2313 771
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Apr 2008
Automated Process Approved IPR001264 (IPR001264 Glycosyl transferase, family 51) Apr 2008
Automated Process Approved IPR001460 (IPR001460 Penicillin-binding protein, transpeptidase) Apr 2008
Automated Process Approved IPR009647 (IPR009647 Penicillin-binding, C-terminal) Apr 2008
Automated Process Approved IPR011815 (IPR011815 Penicillin-binding protein 1C) Apr 2008
Automated Process Approved IPR023346 (IPR023346 Lysozyme-like domain superfamily) Jul 2018
Automated Process Approved PF00912 (PF00912 Transglycosylase) Jul 2018
Automated Process Approved PF00905 (PF00905 Penicillin binding protein transpeptidase domain) Jul 2018
Automated Process Approved PF06832 (PF06832 Penicillin-Binding Protein C-terminus Family) Jul 2018
Automated Process Uncurated GT51 (GT51 Glycosyl Transferase Family 51) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009274 peptidoglycan-based cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0008955 peptidoglycan glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011815
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008658 penicillin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Mutant Phenotype - PubMed ID: 10542235
Reference: Escherichia coli K-12 W3110 		Mar 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pbpC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW2503 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yfgN Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK2515 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2519 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product penicillin binding protein 1C Experimental - PubMed ID: 10542235
Reference: Escherichia coli K-12 W3110 		Mar 2008
Automated Process Approved alternate product name penicillin-binding protein PBP1C murein transglycosylase; inactive transpeptidase domain Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name transglycosylase of penicillin-binding protein 1c Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name penicillin binding protein 1C (PBP 1C) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR001264 Glycosyl transferase, family 51 Protein Sequence Similarity - InterPro Domain: IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00912 Transglycosylase Protein Sequence Similarity - PFAM Model Name: PF00912
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated protein family GT51 Glycosyl Transferase Family 51 Protein Sequence Similarity - CAZy Model Name: GT51
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011815 Penicillin-binding protein 1C Protein Sequence Similarity - InterPro Domain: IPR011815
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR023346 Lysozyme-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR023346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR009647 Penicillin-binding, C-terminal Protein Sequence Similarity - InterPro Domain: IPR009647
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001460 Penicillin-binding protein, transpeptidase Protein Sequence Similarity - InterPro Domain: IPR001460
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF06832 Penicillin-Binding Protein C-terminus Family Protein Sequence Similarity - PFAM Model Name: PF06832
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00905 Penicillin binding protein transpeptidase domain Protein Sequence Similarity - PFAM Model Name: PF00905
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 2.4.1.129 Published Annotation - Database Name: EC2GO: GO:0008955
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.4.2.- Published Annotation - Swiss-Prot Accession Number: P76577 Feb 2006
Automated Process Approved EC number 2.4.1.- Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76577 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947152 Published Annotation - Entrez Gene Database ID: 947152
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P76577 Published Annotation - Swiss-Prot Accession Number: P76577 Jan 2005
Automated Process Approved db xref ASAP:ABE-0008294 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788867 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG14210 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note penicillin binding protein 1C (PBP 1C); GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_process: GO:0009252 - peptidoglycan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75572.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0009274 peptidoglycan-based cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0008955 peptidoglycan glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011815
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008658 penicillin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Mutant Phenotype - PubMed ID: 10542235
Reference: Escherichia coli K-12 W3110 		Mar 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005421 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002158 pbpC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002141 pbpC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002971 pbpC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002136 pbpC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003268 pbpC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000730 pbpC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003350 ponA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004035 ponA CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005137 pbpC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003022 pbpC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006740 pbpC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002544 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008705 pbpC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002506 pbpC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001793 pbpC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006698 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006831 pbpC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007966 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079186 pbpC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002876 pbpC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003357 pbpC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006713 pbpC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007730 pbpC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002966 pbpC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007237 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000864 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007092 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005612 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005087 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006578 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008588 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006229 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006381 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008239 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008038 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006719 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006637 pbpC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008164 pbpC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027490 pbpC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007749 pbpC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007341 pbpC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003070 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002375 pbpC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002589 pbpC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003064 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002966 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002858 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002868 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002853 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002670 pbpC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133404 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003712 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002849 pbpC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002858 pbpC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001188 pbpC CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002214 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003196 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002191 pbpC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001820 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002943 pbpC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001201 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000972 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288727 pbpC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006043 pbpC CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139861 pbpC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004923 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006850 pbpC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000360 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007162 pbpC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008167 pbpC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007751 pbpC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005987 pbpC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007151 pbpC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007035 pbpC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007022 pbpC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006520 pbpC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006296 pbpC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007088 pbpC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008046 pbpC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000337 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000336 pbpC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000413 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007332 pbpC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004851 pbpC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006844 pbpC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007487 pbpC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110864 pbpC CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082037 pbpC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003109 pbpC CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098028 pbpC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006741 pbpC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007743 pbpC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006135 pbpC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263605 CDS
Person Approved Go view Shigella boydii 227 ADV-0002806 pbpC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008303 pbpC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004449 pbpC CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0073885 pbpC pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0088819 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002742 pbpC CDS
Person Approved Go view Shigella sonnei 046 ADD-0002838 pbpC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005944 pbpC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002570 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003182 pbpC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001545 pbpC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002833 pbpC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000341 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030802 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018071 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001941 pbpC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22444mutantTn5 InsertionRequest the StrainABE-0008294pbpCpbpC::Tn5KAN-I-SceI at position 1805 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2640013 to 2652325
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008278hisSCDScomplement26393012640575Downstream
ABE-0285768sroEncRNAcomplement26405952640686Downstream
ABE-0008281ispGCDScomplement26406862641804Downstream
ABE-0008283rodZCDScomplement26418312642844Downstream
ABE-0008287rlmNCDScomplement26431292644283Downstream
ABE-0008291ndkCDScomplement26444332644864Downstream
ABE-0008294pbpCCDScomplement26450132647325Matches
ABE-0008296yfhMCDScomplement26473262652287Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.