Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008299 (sseA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008299 showshow history
Names
sseA JW2505 ECK2517 b2521
Product
3-mercaptopyruvate sulfurtransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2652494 2653339 846 282
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000919
EnteroFam0008299: Trusted threshold=498.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001763 (IPR001763 Rhodanese-like domain) Apr 2008
Automated Process Approved IPR001307 (IPR001307 Thiosulphate sulfurtransferase, conserved site) Apr 2008
Automated Process Approved IPR036873 (IPR036873 Rhodanese-like domain superfamily) Jul 2018
Automated Process Approved PF00581 (PF00581 Rhodanese-like domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004792 thiosulfate sulfurtransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name sseA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2517 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2505 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2521 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 3-mercaptopyruvate sulfurtransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name putative thiosulfate sulfurtransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008299: Trusted threshold=498.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000919
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001763 Rhodanese-like domain Protein Sequence Similarity - InterPro Domain: IPR001763
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001307 Thiosulphate sulfurtransferase, conserved site Protein Sequence Similarity - InterPro Domain: IPR001307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00581 Rhodanese-like domain Protein Sequence Similarity - PFAM Model Name: PF00581
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036873 Rhodanese-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036873
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.8.1.2 Published Annotation - Swiss-Prot Accession Number: P31142 Feb 2006
Person Uncurated MultiFun 1.8.2 (metabolism; metabolism of other compounds; sulfur metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11600 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946993 Published Annotation - Entrez Gene Database ID: 946993
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87082121 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P31142 Published Annotation - Swiss-Prot Accession Number: P31142 Jan 2005
Automated Process Approved db xref ASAP:ABE-0008299 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P31142 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative thiosulfate sulfurtransferase; GO_process: GO:0006790 - sulfur metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75574.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008272 sulfate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006790 sulfur compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004792 thiosulfate sulfurtransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000919 sseA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001019 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001115 sseA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001319 sseA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001689 sseA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001291 sseA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003273 sseA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000726 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003352 sseA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004037 sseA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005714 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020138 sseA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003116 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005133 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303936 sseA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002779 sseA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001068 sseA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006737 sseA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002546 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008703 sseA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002508 sseA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001791 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006695 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006833 sseA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007964 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079188 sseA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002878 sseA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006711 sseA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007732 sseA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002968 sseA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007239 sseA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000866 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007094 sseA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005614 sseA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005089 sseA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006576 sseA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008590 sseA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006227 sseA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006383 sseA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008241 sseA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008040 sseA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006721 sseA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006639 sseA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008166 sseA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027492 sseA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007747 sseA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007343 sseA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003068 sseA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002377 sseA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002591 sseA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003062 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002968 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002856 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002870 sseA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177050 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002855 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002672 sseA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133406 sseA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003714 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002851 sseA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002812 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002860 sseA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001192 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007621 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002216 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003198 sseA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002193 sseA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001818 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002945 sseA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001199 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010673 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000970 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288723 sseA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006045 sseA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063516 sseA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001836 sseA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002715 sseA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008106 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140235 sseA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006852 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000358 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002965 sseA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007165 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008178 sseA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007762 sseA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005985 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007153 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007037 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007020 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006522 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006298 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007090 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008044 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000335 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000334 sseA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000411 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007334 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004849 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006846 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007489 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110870 sseA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082035 sseA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003111 sseA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098034 sseA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006739 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007741 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006862 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004389 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264826 CDS
Person Approved Go view Shigella boydii 227 ADV-0002808 sseA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008305 sseA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004451 sseA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003111 sseA CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0073888 sseA pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0002840 sseA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003510 VCA0620 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002607 sseA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001263 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008276 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002289 sseA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002935 sseA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002329 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236435 sseA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005442 sseA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001101 sseA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005290 sseA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002175 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119195 sseA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006046 sseA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004744 sseA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001916 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007701 sseA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005296 sseA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032741 sseA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005447 sseA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003348 sseA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003007 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006497 sseA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006777 sseA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001303 sseA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001563 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003407 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018084 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001943 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20842mutantTn5 InsertionRequest the StrainABE-0008299sseAsseA::Tn5KAN-2 at position 540 in Minus orientation ,- pKD460Blattner Laboratory
FB20843mutantTn5 InsertionRequest the StrainABE-0008299sseAsseA::Tn5KAN-2 at position 540 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2647494 to 2658339
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008296yfhMCDScomplement26473262652287Upstream
ABE-0008299sseACDSforward26524942653339Matches
ABE-0285830timRncRNAcomplement26533562653455Downstream
ABE-0047260ryfAncRNAforward26538552654158Downstream
ABE-0285829timPCDSforward26540012654126Downstream
ABE-0008301sseBCDScomplement26541572654933Downstream
ABE-0285526repeat_regionforward26549702655066Downstream
ABE-0008305pepBCDScomplement26550752656358Downstream
ABE-0008309iscXCDScomplement26565362656736Downstream
ABE-0008311fdxCDScomplement26567482657083Downstream
ABE-0008315hscACDScomplement26570852658935Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.