Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008305 (pepB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008305 showshow history
Names
pepB yfhI JW2507 ECK2520 b2523
Product
aminopeptidase B
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2655075 2656358 1284 428
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000921
EnteroFam0008305: Trusted threshold=1154; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR008330 (IPR008330 Peptidase M17, peptidase B) Apr 2008
Automated Process Approved IPR000819 (IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal) Apr 2008
Automated Process Approved IPR011356 (IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B) Apr 2008
Automated Process Approved IPR001346 (IPR001346 Interferon regulatory factor DNA-binding domain) Jul 2018
Automated Process Approved PF12404 (PF12404 Peptidase) Jul 2018
Automated Process Approved PF00883 (PF00883 Cytosol aminopeptidase family, catalytic domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000819
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0019538 protein metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011356
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000819
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008330
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0044212 (DEPRECATED) transcription regulatory region DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008235 metalloexopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR008330, IPR011356
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004178 (OBSOLETE) leucyl aminopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008330
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030145 manganese ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008330
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004177 aminopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000819
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pepB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym yfhI Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2507 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2520 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2523 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product aminopeptidase B Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name aminopeptidase B, a cysteinylglycinase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative peptidase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008305: Trusted threshold=1154; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000921
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF12404 Peptidase Protein Sequence Similarity - PFAM Model Name: PF12404
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B Protein Sequence Similarity - InterPro Domain: IPR011356
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001346 Interferon regulatory factor DNA-binding domain Protein Sequence Similarity - InterPro Domain: IPR001346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR000819
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00883 Cytosol aminopeptidase family, catalytic domain Protein Sequence Similarity - PFAM Model Name: PF00883
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008330 Peptidase M17, peptidase B Protein Sequence Similarity - InterPro Domain: IPR008330
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.4.11.23 Published Annotation - Swiss-Prot Accession Number: P37095 Feb 2006
Automated Process Uncurated EC number 3.4.11.- Published Annotation - Database Name: EC2GO: GO:0004177
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.2.3 (metabolism; macromolecule degradation; proteins/peptides/glycopeptides) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12310 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008305 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P37095 Published Annotation - Swiss-Prot Accession Number: P37095 Jan 2005
Automated Process Approved db xref GI:87082123 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948766 Published Annotation - Entrez Gene Database ID: 948766
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37095 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative peptidase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75576.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0019538 protein metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011356
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000819
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000819
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008330
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004178 (OBSOLETE) leucyl aminopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008330
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0044212 (DEPRECATED) transcription regulatory region DNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008235 metalloexopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR008330, IPR011356
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004177 aminopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000819
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030145 manganese ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008330
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000921 pepB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001021 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001116 pepB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000940 pepB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000615 pepB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001148 pepB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002254 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001534 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003276 pepB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000723 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003355 pepB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004040 pepB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005712 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020133 pepB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003118 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005130 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303971 pepB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002791 pepB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001066 pepB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003017 pepB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006733 pepB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002548 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008698 pepB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002510 pepB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001788 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006693 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006837 pepB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007961 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079192 pepB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002881 pepB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003362 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006708 pepB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007737 pepB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002971 pepB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007241 pepB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000868 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007097 pepB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005617 pepB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005092 pepB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006573 pepB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008593 pepB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006224 pepB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006386 pepB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008244 pepB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008043 pepB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006724 pepB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006642 pepB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008169 pepB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027494 pepB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007744 pepB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007347 pepB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003066 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002379 pepB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002594 pepB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003060 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002970 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002854 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002874 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177052 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002857 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002674 pepB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133408 pepB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003716 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002853 pepB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000647 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001625 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002864 pepB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001195 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007623 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002218 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003200 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002195 pepB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001816 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002947 pepB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001197 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010675 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000968 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288721 pepB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006047 pepB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063519 pepB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002971 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004118 pepB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002717 pepB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008109 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144332 pepB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006858 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000354 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002968 pepB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007171 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008186 pepB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007770 pepB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005979 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007160 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007044 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007013 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006527 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006303 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007097 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008038 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000332 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000330 pepB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000404 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007340 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004842 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006850 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007493 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110878 pepB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082032 pepB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003116 pepB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098040 pepB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006733 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007734 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006869 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002078 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264431 pepB CDS
Person Approved Go view Shigella boydii 227 ADV-0002810 pepB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008308 pepB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004456 pepB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003113 pepB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073891 pepB CDS
Person Approved Go view Shigella flexneri 301 ABT-0088823 pepB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002748 pepB CDS
Person Approved Go view Shigella sonnei 046 ADD-0002842 pepB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002494 pepB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000819 VC0755 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005935 pepB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002566 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003177 pepB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001549 pepB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002837 pepB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000336 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240476 pepB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004533 pepB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002807 pepB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006417 pepB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000722 pepB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125012 pepB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004372 pepB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006029 pepB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001792 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006421 pepB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004840 pepB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031015 pepB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007131 pepB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001506 pepB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002680 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005478 pepB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005132 pepB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002947 pepB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003541 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001496 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018092 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001945 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20846mutantTn5 InsertionRequest the StrainABE-0008305pepBpepB::Tn5KAN-I-SceI at position 112 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2650075 to 2661358
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008296yfhMCDScomplement26473262652287Downstream
ABE-0008299sseACDSforward26524942653339Downstream
ABE-0285830timRncRNAcomplement26533562653455Downstream
ABE-0047260ryfAncRNAforward26538552654158Downstream
ABE-0285829timPCDSforward26540012654126Downstream
ABE-0008301sseBCDScomplement26541572654933Downstream
ABE-0285526repeat_regionforward26549702655066Downstream
ABE-0008305pepBCDScomplement26550752656358Matches
ABE-0008309iscXCDScomplement26565362656736Upstream
ABE-0008311fdxCDScomplement26567482657083Upstream
ABE-0008315hscACDScomplement26570852658935Upstream
ABE-0008317hscBCDScomplement26589522659467Upstream
ABE-0008319iscACDScomplement26595632659886Upstream
ABE-0008321iscUCDScomplement26599032660289Upstream
ABE-0008324iscSCDScomplement26603172661531Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.