Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008319 (iscA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008319 showshow history
Names
iscA JW2512 ECK2525 yfhF b2528
Product
Fe-S cluster assembly protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2659563 2659886 324 108
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000925
EnteroFam0008319: Trusted threshold=291.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000361 (IPR000361 FeS cluster biogenesis) Apr 2008
Automated Process Approved IPR011302 (IPR011302 Iron-binding protein IscA, proteobacteria) Apr 2008
Automated Process Approved IPR016092 (IPR016092 FeS cluster insertion protein) Jul 2018
Automated Process Approved IPR035903 (IPR035903 HesB-like domain superfamily) Jul 2018
Automated Process Approved PF01521 (PF01521 Iron-sulphur cluster biosynthesis) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0097428 protein maturation by iron-sulfur cluster transfer GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011302, IPR016092
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011302
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006457 protein folding GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Dec 2006
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0005198 structural molecule activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016092
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011302, IPR016092
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011302
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name iscA Experimental - PubMed ID: 11705400
Reference: Escherichia coli 		Aug 2002
Person Approved synonym JW2512 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2525 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yfhF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b2528 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product Fe-S cluster assembly protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2022
Protein Family
Person Approved EnteroFam EnteroFam0008319: Trusted threshold=291.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000925
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR035903 HesB-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR035903
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011302 Iron-binding protein IscA, proteobacteria Protein Sequence Similarity - InterPro Domain: IPR011302
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016092 FeS cluster insertion protein Protein Sequence Similarity - InterPro Domain: IPR016092
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000361 FeS cluster biogenesis Protein Sequence Similarity - InterPro Domain: IPR000361
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01521 Iron-sulphur cluster biosynthesis Protein Sequence Similarity - PFAM Model Name: PF01521
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 2.3.4 (information transfer; protein related; chaperoning, folding) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12132 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AAC8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008319 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AAC8 Published Annotation - Swiss-Prot Accession Number: P0AAC8 Jan 2006
Automated Process Approved db xref GeneID:946999 Published Annotation - Entrez Gene Database ID: 946999
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788877 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated function involved in Fe-S biosynthesis Experimental - PubMed ID: 11705400
Reference: Azotobacter Vinelandii 		Dec 2006
Person Uncurated function putative regulator believed to be involved in ferredoxin assembly and activation Published Annotation - Database Name: GenProtEC
Reference: Escherichia coli K-12 MG1655 		Dec 2006
Person Approved function putative regulator; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006457 - protein folding Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75581.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0097428 protein maturation by iron-sulfur cluster transfer GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011302, IPR016092
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006457 protein folding GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655 		Dec 2006
Automated Process Approved GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011302
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011302, IPR016092
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0005198 structural molecule activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016092
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011302
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000925 iscA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001800 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001900 iscA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002000 iscA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001879 iscA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002074 iscA CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001539 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003281 iscA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000718 iscA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003360 iscA_2 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004045 iscA_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005707 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020126 iscA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003123 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005125 iscA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003012 iscA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006727 iscA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002553 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008692 iscA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002514 iscA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001782 iscA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006688 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006843 iscA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007955 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079197 iscA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002887 iscA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003368 iscA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006702 iscA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007743 iscA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002976 iscA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007247 iscA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000874 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007103 iscA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005623 iscA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005098 iscA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006567 iscA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008599 iscA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006218 iscA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006392 iscA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008250 iscA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008049 iscA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006730 iscA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006648 iscA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008175 iscA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027499 iscA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007738 iscA_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007352 iscA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003061 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002384 iscA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002599 iscA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003055 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002975 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002849 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002879 iscA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177058 iscA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002862 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002680 iscA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133413 iscA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003722 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002858 iscA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001620 iscA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002869 iscA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001200 iscA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007628 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063524 iscA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001871 iscA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002003 iscA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002722 iscA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008115 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144345 iscA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001455 iscA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006863 iscA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000349 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002974 iscA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007176 iscA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008202 yfhF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007786 yfhF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005974 iscA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007165 iscA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007049 iscA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007008 iscA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006532 iscA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006308 iscA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007102 iscA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008033 iscA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000327 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000325 iscA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000398 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007345 iscA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004837 iscA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006855 iscA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007498 iscA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110895 iscA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082027 iscA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003121 iscA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098057 iscA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006728 iscA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007729 iscA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006874 iscA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265847 CDS
Person Approved Go view Shigella boydii 227 ADV-0002815 iscA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008313 iscA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004462 iscA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003118 iscA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073896 iscA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088828 iscA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002753 yfhF CDS
Person Approved Go view Shigella sonnei 046 ADD-0002847 iscA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000814 VC0750 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005926 iscA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001161 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003163 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001554 iscA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003493 iscA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000331 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240468 iscA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004538 iscA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002812 iscA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006412 iscA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000727 iscA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125027 iscA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004377 iscA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008635 iscA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001787 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006426 iscA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004835 iscA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031009 iscA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007126 iscA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001501 iscA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002685 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005127 iscA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002952 iscA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003546 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001490 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001950 iscA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2654563 to 2664886
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008301sseBCDScomplement26541572654933Downstream
ABE-0285526repeat_regionforward26549702655066Downstream
ABE-0008305pepBCDScomplement26550752656358Downstream
ABE-0008309iscXCDScomplement26565362656736Downstream
ABE-0008311fdxCDScomplement26567482657083Downstream
ABE-0008315hscACDScomplement26570852658935Downstream
ABE-0008317hscBCDScomplement26589522659467Downstream
ABE-0008319iscACDScomplement26595632659886Matches
ABE-0008321iscUCDScomplement26599032660289Upstream
ABE-0008324iscSCDScomplement26603172661531Upstream
ABE-0008326iscRCDScomplement26616432662131Upstream
ABE-0285527repeat_regionforward26623092662574Upstream
ABE-0008332trmJCDScomplement26625832663323Upstream
ABE-0008337suhBCDSforward26634422664245Upstream
ABE-0008340yfhRCDSforward26643902665244Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.