Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008321 (iscU) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008321 showshow history
Names
iscU miaC yfhN hsm-5 nifU JW2513 ECK2526 b2529
Product
Fe-S cluster assembly scaffold protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2659903 2660289 387 129
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000926
EnteroFam0008321: Trusted threshold=373; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR002871 (IPR002871 NIF system FeS cluster assembly, NifU, N-terminal) Apr 2008
Automated Process Approved IPR011339 (IPR011339 ISC system FeS cluster assembly, IscU scaffold) Apr 2008
Automated Process Approved PF01592 (PF01592 NifU-like N terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002871, IPR011339
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655
Dec 2006
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002871, IPR011339
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002871, IPR011339
Reference: Escherichia coli K-12 MG1655
Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name iscU Experimental - PubMed ID: 11972033
Reference: Escherichia coli
Aug 2002
Person Approved synonym JW2513 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym hsm-5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved synonym miaC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved synonym yfhN Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym ECK2526 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym nifU Published Annotation - GenBank Accession Number: AE006468
Reference: Salmonella Typhimurium LT2
Sep 2007
Person Approved locus tag b2529 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product Fe-S cluster assembly scaffold protein Experimental - PubMed ID: 10891064
Reference: Azotobacter vinelandii
Oct 2022
Protein Family
Person Approved EnteroFam EnteroFam0008321: Trusted threshold=373; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000926
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF01592 NifU-like N terminal domain Protein Sequence Similarity - PFAM Model Name: PF01592
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR011339 ISC system FeS cluster assembly, IscU scaffold Protein Sequence Similarity - InterPro Domain: IPR011339
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR002871 NIF system FeS cluster assembly, NifU, N-terminal Protein Sequence Similarity - InterPro Domain: IPR002871
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Uncurated MultiFun 2.3 (information transfer; protein related) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG13395 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1788878 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ACD4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0008321 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P0ACD4 Published Annotation - Swiss-Prot Accession Number: P0ACD4 Jan 2006
Automated Process Approved db xref GeneID:947002 Published Annotation - Entrez Gene Database ID: 947002
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved function involved in Fe-S biosynthesis Experimental - PubMed ID: 11972033
Reference: Escherichia coli K-12 W3110
Dec 2006
Person Approved molecular interaction Interacts with the product of hscA ASAP:8315:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110
Mar 2005
Person Approved molecular interaction Interacts with the product of iscS ASAP:8324:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110
Mar 2005
Automated Process Approved note GO_process: GO:0006412 - translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC75582.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655
Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002871, IPR011339
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655
Dec 2006
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002871, IPR011339
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002871, IPR011339
Reference: Escherichia coli K-12 MG1655
Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000926 iscU CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001896 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001664 iscU CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001856 iscU CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001422 iscU CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002075 iscU CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001540 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129873 iscU CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105271 iscU CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104720 nifU CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003282 nifU CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000717 iscU CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003361 nifU CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004046 nifU CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005706 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020125 iscU CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003124 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005124 iscU CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003011 iscU CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006726 iscU CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002554 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008691 iscU CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002515 iscU CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001781 iscU CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006687 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006844 iscU CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007954 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079199 iscU CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002888 nifU CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003369 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006701 iscU CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007744 iscU CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002977 iscU CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007248 iscU CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000875 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007104 iscU CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005624 iscU CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005099 iscU CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006566 iscU CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008600 iscU CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006217 iscU CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006393 iscU CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008251 iscU CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008050 iscU CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006731 iscU CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006649 iscU CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008176 iscU CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027500 iscU CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007737 iscU CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007353 iscU CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003060 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002385 iscU CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002600 iscU CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003054 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002976 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002848 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002880 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002863 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002681 iscU CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133414 iscU CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003723 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002859 iscU CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001619 iscU CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002870 iscU CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001201 iscU CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007629 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063525 iscU CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001872 icsU CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002004 icsU CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002723 iscU CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008116 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144348 nifU CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001454 iscU CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006864 iscU CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000348 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002975 iscU CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007177 iscU CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008205 nifU CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007789 nifU CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005973 iscU CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007166 iscU CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007050 iscU CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007007 iscU CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006533 iscU CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006309 iscU CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007103 iscU CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008032 iscU CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000326 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000324 iscU CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000397 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007346 iscU CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004836 iscU CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006856 iscU CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007499 iscU CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110899 iscU CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082026 iscU CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003122 nifU CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098060 iscU CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006727 iscU CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007728 iscU CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006875 iscU CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002072 iscU CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265846 CDS
Person Approved Go view Shigella boydii 227 ADV-0002816 iscU CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008314 iscU CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004463 iscU CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003119 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073897 iscU CDS
Person Approved Go view Shigella flexneri 301 ABT-0088829 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002754 CDS
Person Approved Go view Shigella sonnei 046 ADD-0002848 iscU CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002500 nifU CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000813 VC0749 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005924 iscU CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001162 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003161 nifU CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001555 nifU CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003494 iscU CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000330 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240467 iscU CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004539 iscU CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002813 iscU CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006411 iscU CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000728 iscU CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125030 iscU CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004378 iscU CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008634 iscU CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001786 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006427 iscU CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004834 iscU CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031008 iscU CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007125 iscU CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001500 iscU CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002686 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005473 iscU CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005126 iscU CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002953 iscU CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003547 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001489 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018114 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001951 iscU CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2654903 to 2665289
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008301sseBCDScomplement26541572654933Downstream
ABE-0285526repeat_regionforward26549702655066Downstream
ABE-0008305pepBCDScomplement26550752656358Downstream
ABE-0008309iscXCDScomplement26565362656736Downstream
ABE-0008311fdxCDScomplement26567482657083Downstream
ABE-0008315hscACDScomplement26570852658935Downstream
ABE-0008317hscBCDScomplement26589522659467Downstream
ABE-0008319iscACDScomplement26595632659886Downstream
ABE-0008321iscUCDScomplement26599032660289Matches
ABE-0008324iscSCDScomplement26603172661531Upstream
ABE-0008326iscRCDScomplement26616432662131Upstream
ABE-0285527repeat_regionforward26623092662574Upstream
ABE-0008332trmJCDScomplement26625832663323Upstream
ABE-0008337suhBCDSforward26634422664245Upstream
ABE-0008340yfhRCDSforward26643902665244Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.