Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008324 (iscS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008324 showshow history
Names
iscS nuvC yzzO JW2514 ECK2527 yfhO b2530
Product
cysteine desulfurase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2660317 2661531 1215 405
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved IPR000192 (IPR000192 Aminotransferase class V domain) Apr 2008
Automated Process Approved IPR010240 (IPR010240 Cysteine desulfurase IscS) Apr 2008
Automated Process Approved PF00266 (PF00266 Aminotransferase class-V) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0044571 [2Fe-2S] cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010240
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006534 cysteine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010240
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009451 RNA modification GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655
Dec 2006
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0031071 cysteine desulfurase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010240
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name iscS Published Annotation - PubMed ID: 11972033
Reference: Escherichia coli K-12 W3110
Dec 2006
Person Approved synonym yfhO Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym ECK2527 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2514 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yzzO Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved synonym nuvC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved locus tag b2530 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product cysteine desulfurase Experimental - PubMed ID: 11972033
Reference: Escherichia coli K-12 W3110
Dec 2006
Person Approved alternate product name cysteine desulfurase (tRNA sulfurtransferase) PLP-dependent Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family PF00266 Aminotransferase class-V Protein Sequence Similarity - PFAM Model Name: PF00266
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR010240 Cysteine desulfurase IscS Protein Sequence Similarity - InterPro Domain: IPR010240
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR000192 Aminotransferase class V domain Protein Sequence Similarity - InterPro Domain: IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 2.8.1.7 Published Annotation - Swiss-Prot Accession Number: P0A6B7 Feb 2006
Person Approved MultiFun 2.2.3 (information transfer; RNA related; RNA modification) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG12677 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:48994898 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P0A6B7 Published Annotation - Swiss-Prot Accession Number: P0A6B7 Jan 2006
Automated Process Approved db xref GeneID:947004 Published Annotation - Entrez Gene Database ID: 947004
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A6B7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0008324 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved function 2.2.3 information transfer; RNA related; RNA modification Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function required for the biosynthesis of thiamin, NAD, Fe-S clusters, and thionucleosides Experimental - PubMed ID: 10781607
Reference: Escherichia coli
Nov 2003
Person Approved function essential for the biosynthesis of 2-selenouridine in tRNA Experimental - PubMed ID: 11997471
Reference: Escherichia coli
Nov 2003
Person Uncurated molecular interaction interacts with SirA (TusA) (ASAP:ABE-0011336); removes sulfur from cysteine and transfers it to SirA in persulfide form, by co-elution with dimerized IscS in a gel filtration assay Experimental - PubMed ID: 16387657
Reference: Escherichia coli K-12
Jan 2007
Person Approved molecular interaction Interacts with the product of iscU ASAP:8321:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110
Mar 2005
Person Approved molecular interaction Interacts with the product of sirA ASAP:11336:(interacting residues not known); by LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110
Mar 2005
Person Approved molecular interaction Interacts with the product of fdhD ASAP:12714:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110
Mar 2005
Automated Process Approved note cysteine desulfurase; cysteine desulfurase (tRNA sulfurtransferase) PLP-dependent; GO_process: GO:0009451 - RNA modification Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAT48142.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655
Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009451 RNA modification GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655
Dec 2006
Automated Process Uncurated GO biological process GO:0044571 [2Fe-2S] cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR010240
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006534 cysteine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010240
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0031071 cysteine desulfurase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010240
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001022 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000194 iscS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000173 iscS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000219 iscS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000717 iscS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002252 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001541 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129872 yfhO CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105270 nifS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104719 nifS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003283 iscS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000716 iscS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003362 iscS CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004047 iscS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005705 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0046692 iscS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003125 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005123 iscS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303974 iscS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002792 iscS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001065 iscS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003010 iscS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006725 iscS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002555 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008690 iscS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002516 iscS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001780 iscS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006686 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006845 iscS CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009815 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079200 iscS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002889 iscS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003370 iscS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006700 iscS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007745 iscS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002978 iscS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007249 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000876 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007105 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005625 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005100 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006565 iscS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008601 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006216 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006394 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008252 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008051 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006732 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006650 iscS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008177 iscS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027501 iscS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007736 iscS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007354 iscS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003059 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002386 iscS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002601 iscS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003053 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002977 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002847 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002881 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177060 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002864 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002682 iscS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133415 iscS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003724 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002860 iscS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000646 iscS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001618 iscS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002871 iscS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001202 iscS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007630 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002219 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003201 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002196 iscS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001815 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002948 iscS CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001196 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010676 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000967 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288720 iscS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006048 yfhO CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063526 iscS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001873 iscS CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002005 iscS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002724 iscS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008117 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144351 iscS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001453 iscS-2 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006865 iscS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000347 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002976 iscS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007178 iscS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008207 nifS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007791 nifS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005972 iscS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007167 iscS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007051 iscS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007006 iscS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006534 iscS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006310 iscS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007104 iscS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008031 iscS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000325 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000323 iscS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000396 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007347 iscS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004835 iscS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006857 iscS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007500 iscS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110902 iscS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082025 iscS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003123 nifS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098063 iscS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006726 iscS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007727 iscS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006876 iscS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002071 iscS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265845 iscS CDS
Person Approved Go view Shigella boydii 227 ADV-0002817 iscS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008315 iscS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004464 iscS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003120 iscS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073898 iscS CDS
Person Approved Go view Shigella flexneri 301 ABT-0088830 iscS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002755 yfhO CDS
Person Approved Go view Shigella sonnei 046 ADD-0002849 iscS CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0001832 CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002501 iscS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000812 VC0748 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135783 yfhO CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000450 iscS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005923 iscS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001163 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003158 iscS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001556 iscS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003495 iscS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000329 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240466 iscS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004540 iscS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002814 iscS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006410 iscS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000729 iscS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125032 iscS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004379 iscS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008633 iscS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004168 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006428 iscS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004833 iscS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031007 iscS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007124 iscS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001499 iscS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002687 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005472 iscS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005125 iscS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002954 iscS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003548 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001488 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018118 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001952 iscS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2655317 to 2666531
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008305pepBCDScomplement26550752656358Downstream
ABE-0008309iscXCDScomplement26565362656736Downstream
ABE-0008311fdxCDScomplement26567482657083Downstream
ABE-0008315hscACDScomplement26570852658935Downstream
ABE-0008317hscBCDScomplement26589522659467Downstream
ABE-0008319iscACDScomplement26595632659886Downstream
ABE-0008321iscUCDScomplement26599032660289Downstream
ABE-0008324iscSCDScomplement26603172661531Matches
ABE-0008326iscRCDScomplement26616432662131Upstream
ABE-0285527repeat_regionforward26623092662574Upstream
ABE-0008332trmJCDScomplement26625832663323Upstream
ABE-0008337suhBCDSforward26634422664245Upstream
ABE-0008340yfhRCDSforward26643902665244Upstream
ABE-0008346csiECDSforward26654352666715Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.