Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008337 (suhB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008337 showshow history
Names
suhB ssyA JW2517 ECK2530 b2533
Product
inositol monophosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2663442 2664245 804 268
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000760 (IPR000760 Inositol monophosphatase-like) Apr 2008
Automated Process Approved PF00459 (PF00459 Inositol monophosphatase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006350 (DEPRECATED) transcription Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0046854 phosphatidylinositol phosphate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000760
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004437 (OBSOLETE) inositol or phosphatidylinositol phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000760
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name suhB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2530 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ssyA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2517 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2533 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product inositol monophosphatase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name inositol monophosphatase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name inositol-1-monophosphatase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF00459 Inositol monophosphatase family Protein Sequence Similarity - PFAM Model Name: PF00459
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000760 Inositol monophosphatase-like Protein Sequence Similarity - InterPro Domain: IPR000760
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.1.3.25 Published Annotation - Swiss-Prot Accession Number: P0ADG4 Feb 2006
Person Uncurated MultiFun 2.2.2 (information transfer; RNA related; transcription related) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 3.1.3.2 (regulation; type of regulation; posttranscriptional; covalent modification, demodification, maturation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10983 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788882 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947285 Published Annotation - Entrez Gene Database ID: 947285
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0ADG4 Published Annotation - Swiss-Prot Accession Number: P0ADG4 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ADG4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008337 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function phenotype; Global regulatory functions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note inositol-1-monophosphatase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006350 - transcription Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75586.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0046854 phosphatidylinositol phosphate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000760
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006350 (DEPRECATED) transcription Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004437 (OBSOLETE) inositol or phosphatidylinositol phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000760
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001025 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000212 suhB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000193 suhB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000223 suhB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000679 suhB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002249 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001544 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129555 suhB CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104990 suhB CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104394 suhB CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003286 suhB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000713 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003366 suhB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004051 suhB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005702 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018173 suhB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003128 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005120 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303984 suhB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002795 suhB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001062 suhB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003007 suhB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006722 suhB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002558 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008687 suhB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002519 suhB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001777 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006683 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006848 suhB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009812 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079203 suhB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002892 suhB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003373 suhB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006697 suhB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007748 suhB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002981 suhB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007252 suhB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000879 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007108 suhB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005628 suhB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005103 suhB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006562 suhB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008604 suhB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006213 suhB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006397 suhB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009693 suhB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008054 suhB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006735 suhB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006653 suhB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008180 suhB CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0285165 suhB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007733 suhB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007358 suhB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003056 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002389 suhB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002604 suhB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003050 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002980 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002844 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002884 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177063 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002868 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002685 suhB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133418 suhB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003727 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002863 suhB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000643 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001615 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002874 suhB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001205 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007633 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002222 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003204 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002200 suhB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001812 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002951 suhB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001193 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010679 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000964 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288717 suhB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006051 suhB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063529 suhB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001834 suhB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000833 suhB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002727 suhB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008120 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144359 suhB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001449 suhB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006868 suhB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000344 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002979 suhB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007182 suhB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008215 suhB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007799 suhB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005968 suhB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007170 suhB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007054 suhB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006537 suhB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006313 suhB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007108 suhB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008027 suhB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000322 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000320 suhB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000391 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007350 suhB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004831 suhB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006861 suhB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007504 suhB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110912 suhB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082022 suhB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003129 suhB CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0098073 suhB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006723 suhB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007724 suhB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006880 suhB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265841 suhB CDS
Person Approved Go view Shigella boydii 227 ADV-0002820 suhB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008318 suhB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004467 suhB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003123 suhB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073902 suhB CDS
Person Approved Go view Shigella flexneri 301 ABT-0088833 suhB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002758 suhB CDS
Person Approved Go view Shigella sonnei 046 ADD-0002852 suhB CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0001835 CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002504 suhB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000809 VC0745 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135784 suhB CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000451 suhB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005916 suhB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001166 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003148 suhB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001559 suhB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003498 suhB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000326 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240463 suhB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004543 suhB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002817 suhB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006407 suhB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000732 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125041 suhB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004382 suhB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008630 suhB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002519 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009816 suhB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004830 suhB CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031004 suhB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007121 suhB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001496 suhB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002690 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005469 suhB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005122 suhB CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002957 suhB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003551 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001485 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018129 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001955 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
STR0020mutantTn5 InsertionNULLABE-0008337suhBInsertion site not determined2jdg
FB23721mutantTn5 InsertionRequest the StrainABE-0008337suhBsuhB::Tn5KAN-I-SceI at position 752 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2658442 to 2669245
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008315hscACDScomplement26570852658935Upstream
ABE-0008317hscBCDScomplement26589522659467Upstream
ABE-0008319iscACDScomplement26595632659886Upstream
ABE-0008321iscUCDScomplement26599032660289Upstream
ABE-0008324iscSCDScomplement26603172661531Upstream
ABE-0008326iscRCDScomplement26616432662131Upstream
ABE-0285527repeat_regionforward26623092662574Upstream
ABE-0008332trmJCDScomplement26625832663323Upstream
ABE-0008337suhBCDSforward26634422664245Matches
ABE-0008340yfhRCDSforward26643902665244Downstream
ABE-0008346csiECDSforward26654352666715Downstream
ABE-0008348hcaTCDScomplement26667072667846Downstream
ABE-0008351hcaRCDScomplement26680062668896Downstream
ABE-0285710iroKCDScomplement26680062668071Downstream
ABE-0008355hcaECDSforward26690322670393Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.