Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008348 (hcaT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008348 showshow history
Names
hcaT yfhS JW2520 ECK2533 b2536
Product
putative 3-phenylpropionate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2666707 2667846 1140 380
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000929
EnteroFam0008348: Trusted threshold=928.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR000576 (IPR000576 LacY/RafB permease family) Apr 2008
Automated Process Approved IPR005276 (IPR005276 (DEPRECATED) Phenylproprionate permease) Apr 2008
Automated Process Approved IPR024989 (IPR024989 Major facilitator superfamily associated domain) Jul 2018
Automated Process Approved IPR026032 (IPR026032 Probable 3-phenylpropionic acid transporter) Jul 2018
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF12832 (PF12832 MFS_1 like family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0042889 3-phenylpropionic acid transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005403 (DEPRECATED) hydrogen:sugar symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name hcaT Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2533 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yfhS Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2520 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2536 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative 3-phenylpropionate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name putative 3-phenylpropionic acid transport protein (MFS family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name MFS (major facilitator superfamily) transporter Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008348: Trusted threshold=928.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000929
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005276 (DEPRECATED) Phenylproprionate permease Protein Sequence Similarity - InterPro Domain: IPR005276
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000576 LacY/RafB permease family Protein Sequence Similarity - InterPro Domain: IPR000576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR026032 Probable 3-phenylpropionic acid transporter Protein Sequence Similarity - InterPro Domain: IPR026032
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR024989 Major facilitator superfamily associated domain Protein Sequence Similarity - InterPro Domain: IPR024989
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF12832 MFS_1 like family Protein Sequence Similarity - PFAM Model Name: PF12832
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 4.S.4 (transport; substrate; 3-phenylpropionic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788886 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947007 Published Annotation - Entrez Gene Database ID: 947007
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:Q47142 Published Annotation - Swiss-Prot Accession Number: Q47142 Jan 2006
Automated Process Approved db xref ASAP:ABE-0008348 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13454 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note MFS (major facilitator superfamily) transporter; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75589.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0042889 3-phenylpropionic acid transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005403 (DEPRECATED) hydrogen:sugar symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000929 hcaT CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001899 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001474 hcaT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001555 hcaT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002173 hcaT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001680 hcaT CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001551 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003290 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000709 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003376 hcaT CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004062 hcaT CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005691 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018182 hcaT CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003135 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005116 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003002 hcaT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006718 hcaT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002561 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008683 hcaT CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002522 hcaT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001774 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006680 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006851 hcaT CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079206 hcaT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002895 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003376 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006694 hcaT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007751 hcaT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002984 hcaT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007255 hcaT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000882 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007111 hcaT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005631 hcaT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005106 hcaT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006559 hcaT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008607 hcaT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006210 hcaT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006400 hcaT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009690 hcaT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008057 hcaT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006738 hcaT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006656 hcaT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008183 hcaT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027507 hcaT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007730 hcaT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007361 hcaT CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003053 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002392 hcaT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002607 hcaT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003047 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002983 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002841 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002887 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177067 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002871 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002688 hcaT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133421 hcaT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003730 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002866 hcaT CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000639 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002879 hcaT CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001209 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007644 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002227 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003209 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002206 hcaT CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001807 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002956 hcaT CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001188 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010683 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000958 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288712 hcaT CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006056 hcaT CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063538 hcaT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001861 hcaT CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002011 hcaT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002737 hcaT CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008133 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144368 hctA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006876 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000337 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002987 hcaT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007190 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008248 hcaT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007827 hcaT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005960 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007178 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007062 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006995 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006545 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006321 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007116 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008019 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000314 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000312 hcaT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000383 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007358 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004823 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006869 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007512 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110938 hcaT CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082014 hcaT CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003137 hcaT CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098096 hcaT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006715 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007716 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006888 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002068 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266688 CDS
Person Approved Go view Shigella boydii 227 ADV-0002823 hcaT CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008321 hcaT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004470 hcaT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003126 hcaT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073905 hcaT CDS
Person Approved Go view Shigella flexneri 301 ABT-0088836 hcaT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002761 hcaT CDS
Person Approved Go view Shigella sonnei 046 ADD-0002855 hcaT CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002506 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000318 VC0302 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005914 hcaT CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001170 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003138 hcaT CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001563 hcaT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003502 hcaT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000322 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240439 hcaT CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004548 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002822 hcaT CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006403 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000737 hcaT CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125059 hcaT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004406 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008625 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002514 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009822 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004826 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030998 hcaT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007115 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001491 hcaT CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002695 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005465 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005118 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002961 hcaT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003556 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001480 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018152 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001962 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22448mutantTn5 InsertionRequest the StrainABE-0008348hcaThcaT::Tn5KAN-I-SceI at position 1093 in Minus orientation ,+ pKD460Blattner Laboratory
FB23597mutantTn5 InsertionRequest the StrainABE-0008348hcaThcaT::Tn5KAN-I-SceI at position 1093 in Minus orientation ,- pKD460Blattner Laboratory
FB23723mutantTn5 InsertionRequest the StrainABE-0008348hcaThcaT::Tn5KAN-I-SceI at position 1093 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2661707 to 2672846
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008326iscRCDScomplement26616432662131Downstream
ABE-0285527repeat_regionforward26623092662574Downstream
ABE-0008332trmJCDScomplement26625832663323Downstream
ABE-0008337suhBCDSforward26634422664245Downstream
ABE-0008340yfhRCDSforward26643902665244Downstream
ABE-0008346csiECDSforward26654352666715Overlaps Downstream
ABE-0008348hcaTCDScomplement26667072667846Matches
ABE-0008351hcaRCDScomplement26680062668896Upstream
ABE-0285710iroKCDScomplement26680062668071Upstream
ABE-0008355hcaECDSforward26690322670393Upstream
ABE-0008357hcaFCDSforward26703902670908Upstream
ABE-0008359hcaCCDSforward26709082671228Upstream
ABE-0008361hcaBCDSforward26712252672037Upstream
ABE-0008363hcaDCDSforward26720472673249Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.