Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008359 (hcaC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008359 showshow history
Names
hcaC yfhW phdB hcaA3 JW2524 ECK2537 b2540
Product
putative 3-phenylpropionate/cinnamate dioxygenase ferredoxin subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2670908 2671228 321 107
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005806 (IPR005806 (DEPRECATED) Rieske [2Fe-2S] region) Apr 2008
Automated Process Approved IPR017941 (IPR017941 Rieske [2Fe-2S] iron-sulphur domain) Jul 2018
Automated Process Approved IPR036922 (IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily) Jul 2018
Automated Process Approved PF00355 (PF00355 Rieske [2Fe-2S] domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017941, IPR036922
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005806
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0051537 2 iron, 2 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017941, IPR036922
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005806
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hcaC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2537 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2524 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yfhW Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym phdB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym hcaA3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2540 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative 3-phenylpropionate/cinnamate dioxygenase ferredoxin subunit Published Annotation - EcoCyc Accession Number: G7334
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name 3-phenylpropionate dioxygenase, predicted ferredoxin subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name phenylpropionate dioxygenase, ferredoxin subunit Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name ferredoxin subunit of phenylpropionate dioxygenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR017941 Rieske [2Fe-2S] iron-sulphur domain Protein Sequence Similarity - InterPro Domain: IPR017941
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005806 (DEPRECATED) Rieske [2Fe-2S] region Protein Sequence Similarity - InterPro Domain: IPR005806
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036922
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00355 Rieske [2Fe-2S] domain Protein Sequence Similarity - PFAM Model Name: PF00355
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.-.-.- Protein Sequence Similarity - InterPro Domain: IPR005806
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13458 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008359 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABW0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947015 Published Annotation - Entrez Gene Database ID: 947015
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788890 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ABW0 Published Annotation - Swiss-Prot Accession Number: P0ABW0 Jan 2006
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ferredoxin subunit of phenylpropionate dioxygenase; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75593.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005806
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017941, IPR036922
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0051537 2 iron, 2 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017941, IPR036922
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005806
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005338 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003355 hcaC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003242 hcaC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007830 hcaC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003538 hcaC CDS
Ortholog
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004070 hcaC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006714 hcaC CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008679 hcaC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006676 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006855 hcaC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009804 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002899 bphA3 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003381 hcaC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006690 hcaC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007755 hcaC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007259 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000886 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007115 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005635 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005110 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006555 hcaC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008611 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006206 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006404 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009686 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008061 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006742 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006660 hcaC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008187 hcaC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027511 hcaC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007365 hcaC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002396 hcaC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002611 hcaC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003043 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002987 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002837 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002875 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002692 hcaC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133425 hcaC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003734 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141873 hcaC CDS
Person Approved Go view Shigella boydii 227 ADV-0002827 hcaC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004475 hcaC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073909 hcaC CDS
Person Approved Go view Shigella flexneri 301 ABT-0088840 hcaC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002765 hcaC CDS
Person Approved Go view Shigella sonnei 046 ADD-0002859 hcaC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003087 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009899 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001697 andAb CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003852 bphA3 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002240 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242807 hcaA12 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007472 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000419 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006719 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002422 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118350 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006711 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004916 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004176 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006576 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007993 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033081 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007876 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003762 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000693 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006249 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004788 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003308 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003979 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22641mutantTn5 InsertionRequest the StrainABE-0008359hcaChcaC::Tn5KAN-I-SceI at position 181 in Plus orientation ,+ pKD460Blattner Laboratory
FB23599mutantTn5 InsertionRequest the StrainABE-0008359hcaChcaC::Tn5KAN-I-SceI at position 181 in Plus orientation ,- pKD460Blattner Laboratory
FB23725mutantTn5 InsertionRequest the StrainABE-0008359hcaChcaC::Tn5KAN-I-SceI at position 181 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2665908 to 2676228
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008346csiECDSforward26654352666715Upstream
ABE-0008348hcaTCDScomplement26667072667846Upstream
ABE-0008351hcaRCDScomplement26680062668896Upstream
ABE-0285710iroKCDScomplement26680062668071Upstream
ABE-0008355hcaECDSforward26690322670393Upstream
ABE-0008357hcaFCDSforward26703902670908Overlaps Upstream
ABE-0008359hcaCCDSforward26709082671228Matches
ABE-0008361hcaBCDSforward26712252672037Overlaps Downstream
ABE-0008363hcaDCDSforward26720472673249Downstream
ABE-0008365yphACDSforward26733462673768Downstream
ABE-0285528repeat_regionforward26737762673809Downstream
ABE-0008368yphBCDScomplement26738162674688Downstream
ABE-0008370yphCCDScomplement26747002675761Downstream
ABE-0008373yphDCDScomplement26758272676825Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.