Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008396 (hmp) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008396 showshow history
Names
hmp hmpX fsrB hmpA JW2536 ECK2549 b2552
Product
bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2685835 2687025 1191 397
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000930
EnteroFam0008396: Trusted threshold=998.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR009050 (IPR009050 Globin-like superfamily) Apr 2008
Automated Process Approved IPR012292 (IPR012292 Globin/Protoglobin) Apr 2008
Automated Process Approved IPR000971 (IPR000971 Globin) Apr 2008
Automated Process Approved IPR014365 (IPR014365 (DEPRECATED) Flavohemoprotein) Apr 2008
Automated Process Approved IPR008333 (IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain) Apr 2008
Automated Process Approved IPR001433 (IPR001433 Oxidoreductase FAD/NAD(P)-binding) Apr 2008
Automated Process Approved IPR001221 (IPR001221 (DEPRECATED) Phenol hydroxylase reductase) Apr 2008
Automated Process Approved IPR017938 (IPR017938 Riboflavin synthase-like beta-barrel) Jul 2018
Automated Process Approved IPR039261 (IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain) Jul 2018
Automated Process Approved PF00970 (PF00970 Oxidoreductase FAD-binding domain) Jul 2018
Automated Process Approved PF00175 (PF00175 Oxidoreductase NAD-binding domain) Jul 2018
Automated Process Approved PF00042 (PF00042 Globin) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001433
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0019825 oxygen binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hmp Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2549 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2536 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym hmpA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved synonym hmpX Published Annotation - GenBank Accession Number: BX950851
Reference: Erwinia carotovora SCRI1043 		Sep 2007
Automated Process Approved synonym fsrB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2552 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Apr 2007
Person Approved alternate product name dihydropteridine reductase, ferrisiderophore reductase activity Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name fused nitric oxide dioxygenase/dihydropteridine reductase 2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0008396: Trusted threshold=998.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000930
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR012292 Globin/Protoglobin Protein Sequence Similarity - InterPro Domain: IPR012292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000971 Globin Protein Sequence Similarity - InterPro Domain: IPR000971
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009050 Globin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR009050
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014365 (DEPRECATED) Flavohemoprotein Protein Sequence Similarity - InterPro Domain: IPR014365
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001433 Oxidoreductase FAD/NAD(P)-binding Protein Sequence Similarity - InterPro Domain: IPR001433
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00970 Oxidoreductase FAD-binding domain Protein Sequence Similarity - PFAM Model Name: PF00970
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Protein Sequence Similarity - InterPro Domain: IPR039261
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00175 Oxidoreductase NAD-binding domain Protein Sequence Similarity - PFAM Model Name: PF00175
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00042 Globin Protein Sequence Similarity - PFAM Model Name: PF00042
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017938 Riboflavin synthase-like beta-barrel Protein Sequence Similarity - InterPro Domain: IPR017938
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001221 (DEPRECATED) Phenol hydroxylase reductase Protein Sequence Similarity - InterPro Domain: IPR001221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved EC number 1.14.12.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved EC number 1.14.12.17 Published Annotation - Swiss-Prot Accession Number: P24232 Feb 2006
Automated Process Approved EC number 1.5.1.34 Published Annotation - GenPept Accession Number: BX936398
Reference: Yersinia pseudotuberculosis IP32953 		Sep 2007
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788903 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947018 Published Annotation - Entrez Gene Database ID: 947018
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P24232 Published Annotation - Swiss-Prot Accession Number: P24232 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P24232 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008396 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10456 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Electron transport Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note dihydropteridine reductase, ferrisiderophore reductase activity Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75605.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001433
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008333
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0019825 oxygen binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012292
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000930 hmp CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002523 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001657 hmp CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001522 hmp CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001878 hmp CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001608 hmp CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003296 hmp CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000691 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003383 hmp CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004074 hmp CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005689 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019638 hmp CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003137 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005113 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001057 hmp CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002992 hmp CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006702 hmp CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002574 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008665 hmp CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002532 hmpA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001763 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006662 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006869 hmp CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009344 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079218 hmp CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002913 hmp CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003393 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006677 hmp CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007769 hmp CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002994 hmp CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007271 hmp CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000899 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007129 hmp CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005649 hmp CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005124 hmp CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006541 hmp CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008625 hmp CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006192 hmp CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006418 hmp CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009672 hmp CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008075 hmp CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006756 hmp CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006674 hmp CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008205 hmp CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027524 hmp CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007717 hmp CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007379 hmp CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003043 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002408 hmp CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002623 hmp CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002977 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002999 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002825 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002897 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002888 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002704 hmp CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133437 hmp CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003748 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002879 hmpA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000637 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002886 hmpA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001212 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002229 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003211 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002208 hmp CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001805 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002958 hmp CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001186 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010694 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000956 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288710 hmp CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006058 hmpA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063540 hmp CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001878 hmpX CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000836 hmpX CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002739 hmp CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008135 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144375 hmpA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006879 hmp CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000333 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0002990 hmp CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007193 hmp CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008254 hmpA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007833 hmpA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005957 hmp CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007181 hmp CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007065 hmp CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006992 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006548 hmp CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006324 hmp CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007119 hmp CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008016 hmp CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000312 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000310 hmp CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000379 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007361 hmp CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004820 hmp CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006872 hmp CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007515 hmp CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110946 hmp CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082012 hmp CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003140 hmpA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098107 hmp CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006712 hmp CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007713 hmp CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006891 hmp CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002065 CDS
Person Approved Go view Shigella boydii 227 ADV-0002845 hmp CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008327 hmp CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004492 hmp CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003138 hmp CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073923 hmp CDS
Person Approved Go view Shigella flexneri 301 ABT-0088850 hmp CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002777 hmpA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002873 hmp CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002519 hmp CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003072 VCA0183 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005908 hmp CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001172 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003131 fsrB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001565 fsrB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003504 hmp CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000320 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240433 hmp CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004551 hmp CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002827 hmp CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006399 hmp CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000741 hmp CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125080 hmp CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004402 hmp CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008622 hmp CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002044 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008567 hmp CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004822 hmp CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030994 hmp CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007112 hmp CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001487 hmp CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002700 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005462 hmp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005114 hmp CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002965 hmp CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003562 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001474 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018221 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001976 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22068mutantTn5 InsertionRequest the StrainABE-0008396hmphmpA::Tn5KAN-I-SceI at position 384 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2680835 to 2692025
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008380yphGCDScomplement26794642682745Upstream
ABE-0008384yphHCDSforward26828632684056Upstream
ABE-0285529repeat_regionforward26841172684214Upstream
ABE-0008389glyACDScomplement26842542685507Upstream
ABE-0008396hmpCDSforward26858352687025Matches
ABE-0285530repeat_regionforward26870352687054Downstream
ABE-0008398glnBCDScomplement26870702687408Downstream
ABE-0008400glrRCDScomplement26874692688803Downstream
ABE-0008405qseGCDScomplement26887932689506Downstream
ABE-0008409glrKCDScomplement26896712691098Downstream
ABE-0047261glmYncRNAcomplement26911572691340Downstream
ABE-0008412purLCDScomplement26916562695543Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.