Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008412 (purL) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008412 showshow history
Names
purL purG JW2541 ECK2555 purI b2557
Product
phosphoribosylformyl-glycineamide synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2691656 2695543 3888 1296
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000933
EnteroFam0008412: Trusted threshold=3723.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000728 (IPR000728 (DEPRECATED) AIR synthase related protein, N-terminal domain) Apr 2008
Automated Process Approved IPR010918 (IPR010918 PurM-like, C-terminal domain) Apr 2008
Automated Process Approved IPR010073 (IPR010073 Phosphoribosylformylglycinamidine synthase PurL) Apr 2008
Automated Process Approved IPR029062 (IPR029062 Class I glutamine amidotransferase-like) Jul 2018
Automated Process Approved IPR036921 (IPR036921 PurM-like, N-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036604 (IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily) Jul 2018
Automated Process Approved IPR036676 (IPR036676 PurM-like, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF02769 (PF02769 AIR synthase related protein, C-terminal domain) Jul 2018
Automated Process Approved PF13507 (PF13507 CobB/CobQ-like glutamine amidotransferase domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010073
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004642 phosphoribosylformylglycinamidine synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010073
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000728
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name purL Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym purI Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW2541 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2555 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym purG Published Annotation - GenBank Accession Number: AE006468
Reference: Salmonella Typhimurium LT2 		Sep 2007
Person Approved locus tag b2557 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphoribosylformyl-glycineamide synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphoribosylformyl-glycineamide synthetase = FGAM synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name phosphoribosylformyl-glycineamide synthetase (FGAM synthetase) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008412: Trusted threshold=3723.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000933
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR010918 PurM-like, C-terminal domain Protein Sequence Similarity - InterPro Domain: IPR010918
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000728 (DEPRECATED) AIR synthase related protein, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR000728
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010073 Phosphoribosylformylglycinamidine synthase PurL Protein Sequence Similarity - InterPro Domain: IPR010073
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029062 Class I glutamine amidotransferase-like Protein Sequence Similarity - InterPro Domain: IPR029062
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036676 PurM-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036676
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02769 AIR synthase related protein, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02769
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13507 CobB/CobQ-like glutamine amidotransferase domain Protein Sequence Similarity - PFAM Model Name: PF13507
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036604
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036921 PurM-like, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036921
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 6.3.5.3 Published Annotation - Swiss-Prot Accession Number: P15254 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.2.1 (metabolism; building block biosynthesis; nucleotide; purine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:48994899 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10797 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008412 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947032 Published Annotation - Entrez Gene Database ID: 947032
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P15254 Published Annotation - Swiss-Prot Accession Number: P15254 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P15254 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Purine ribonucleotide biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note phosphoribosylformyl-glycineamide synthetase = FGAM synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006164 - purine nucleotide biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48143.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved sequence correction version m56: F847 to Y Experimental - GenBank Accession Number: AG613233
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010073
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006164 purine nucleotide biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004642 phosphoribosylformylglycinamidine synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010073
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000728
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000933 purL CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001031 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000497 purL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000343 purL CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001441 purL CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000712 purL CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002239 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001559 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003301 purL CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000686 purL CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003393 purL CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004080 purL CDS
Person Uncurated Go view Citrobacter freundii ATCC 8090 [T] (AToL DRAFT) API-0005090 purL pseudogene
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005673 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019661 purL CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003148 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005108 purL CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304015 purL CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002804 purL CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001052 purL CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002983 purL CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006695 purL CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002579 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008658 purL CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002537 purL CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001758 purL CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006655 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006876 purL CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008316 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079223 purL CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002918 purL CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003398 purL CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006670 purL CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007776 purL CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003000 purL CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007276 purL CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007135 purL CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005655 purL CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005130 purL CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006535 purL CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008631 purL CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006186 purL CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006424 purL CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009665 purL CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008081 purL CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006762 purL CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006680 purL CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008211 purL CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027529 purL CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007710 purL CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007385 purL CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003038 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002413 purL CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002629 purL CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002972 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003004 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002820 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002902 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002893 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002709 purL CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133442 purL CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003753 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002885 purL CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002817 purL CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004092 purL CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002891 purL CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001217 purL CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007659 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002235 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003218 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002213 purL CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001799 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002963 purL CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001181 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010701 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000950 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288703 purL CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006064 purL CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063547 purL CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002965 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004122 purL CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008146 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144425 purL CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001489 purL CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006894 purL CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000321 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003002 purG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007204 purL CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008298 purG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007874 purG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005945 purL CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007193 purL CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007077 purL CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006982 purL CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006558 purL CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006334 purL CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007130 purL CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008006 purL CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000302 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000300 purL CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000367 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007372 purL CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004810 purL CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006882 purL CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007525 purL CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110979 purL CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082003 purL CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003150 purG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098136 purL CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006701 purL CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007700 purL CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006903 purL CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002049 purL CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266911 purL CDS
Person Approved Go view Shigella boydii 227 ADV-0002850 purL CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008334 purL CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004498 purL CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003143 purL CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073929 purL CDS
Person Approved Go view Shigella flexneri 301 ABT-0088855 purL CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002782 purL CDS
Person Approved Go view Shigella sonnei 046 ADD-0002878 purL CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000933 VC0869 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000293 purL CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005898 purL CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001184 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003089 purI CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001578 purI_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001718 purL CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000308 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240417 purL CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007745 purL CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002842 purL CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006419 purL CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000750 purL CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125109 purL CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004390 purL CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008612 purL CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008577 purL CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004806 purL CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030980 purL CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007101 purL CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001471 purL CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002715 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005452 purL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005103 purL CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002975 purL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003576 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001460 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018260 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001981 purL CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22069mutantTn5 InsertionRequest the StrainABE-0008412purLpurL::Tn5KAN-I-SceI at position 3268 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2686656 to 2700543
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008396hmpCDSforward26858352687025Downstream
ABE-0285530repeat_regionforward26870352687054Downstream
ABE-0008398glnBCDScomplement26870702687408Downstream
ABE-0008400glrRCDScomplement26874692688803Downstream
ABE-0008405qseGCDScomplement26887932689506Downstream
ABE-0008409glrKCDScomplement26896712691098Downstream
ABE-0047261glmYncRNAcomplement26911572691340Downstream
ABE-0008412purLCDScomplement26916562695543Matches
ABE-0008417mltFCDSforward26958012697357Upstream
ABE-0008419tadACDScomplement26973542697857Upstream
ABE-0008421pgpCCDScomplement26979152698550Upstream
ABE-0008428yfhHCDSforward26987592699607Upstream
ABE-0008431yfhLCDSforward26996632699923Upstream
ABE-0285224shoBCDScomplement27001172700197Upstream
ABE-0285190ohsCncRNAforward27005202700596Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.