Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008417 (mltF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008417 showshow history
Names
mltF yfhD JW2542 ECK2556 b2558
Product
lytic transglycosylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2695801 2697357 1557 519
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000934
EnteroFam0008417: Trusted threshold=1022.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001638 (IPR001638 Solute-binding protein family 3/N-terminal domain of MltF) Apr 2008
Automated Process Approved IPR000189 (IPR000189 Prokaryotic transglycosylase, active site) Apr 2008
Automated Process Approved IPR008258 (IPR008258 Transglycosylase SLT domain 1) Apr 2008
Automated Process Approved IPR023346 (IPR023346 Lysozyme-like domain superfamily) Jul 2018
Automated Process Approved PF01464 (PF01464 Transglycosylase SLT domain) Jul 2018
Automated Process Approved PF00497 (PF00497 Bacterial extracellular solute-binding proteins, family 3) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0009279 cell outer membrane GO Inferred from Direct Assay - PubMed ID: 18234673
Reference: Escherichia coli K-12 W3110 		Mar 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name mltF Published Sequence Analysis - PubMed ID: 18234673
Reference: Escherichia coli K-12 W3110 		Mar 2008
Person Approved synonym ECK2556 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yfhD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2542 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2558 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product lytic transglycosylase Experimental - PubMed ID: 18234673
Reference: Escherichia coli K-12 W3110 		Mar 2008
Automated Process Approved alternate product name membrane-bound lytic transglycosylase F, murein hydrolase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0008417: Trusted threshold=1022.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000934
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR008258 Transglycosylase SLT domain 1 Protein Sequence Similarity - InterPro Domain: IPR008258
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000189 Prokaryotic transglycosylase, active site Protein Sequence Similarity - InterPro Domain: IPR000189
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Protein Sequence Similarity - InterPro Domain: IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR023346 Lysozyme-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR023346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01464 Transglycosylase SLT domain Protein Sequence Similarity - PFAM Model Name: PF01464
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00497 Bacterial extracellular solute-binding proteins, family 3 Protein Sequence Similarity - PFAM Model Name: PF00497
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 3.2.1.- Protein Sequence Similarity - InterPro Domain: IPR000189
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment The coordinates of mltF have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site predicted by a published sequence analysis, adding 46 codons to the N-terminus. Published Sequence Analysis - PubMed ID: 18234673
Reference: Escherichia coli K-12 W3110 		Mar 2008
Automated Process Approved db xref ASAP:ABE-0008417 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:171474010 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947028 Published Annotation - Entrez Gene Database ID: 947028
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AGC5 Published Annotation - Swiss-Prot Accession Number: P0AGC5 Jan 2006
Automated Process Approved db xref EcoGene:EG11373 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGC5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme, transporter; Not classified Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative periplasmic binding transport protein; GO_component: GO:0042597 - periplasmic space Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75611.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0009279 cell outer membrane GO Inferred from Direct Assay - PubMed ID: 18234673
Reference: Escherichia coli K-12 W3110 		Mar 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000934 mltF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001032 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001209 mltF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001276 mltF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001442 mltF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001499 mltF CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003302 mltF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000685 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003394 mltF CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004081 mltF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005672 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019662 mltF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003149 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005107 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304020 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002805 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001051 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002982 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006694 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002580 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008657 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002538 yfhD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001757 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006653 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006878 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008315 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079224 mltF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002919 mltF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003399 yfhD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006668 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007777 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003001 yfhD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007277 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000905 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007136 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005656 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005131 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006534 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008632 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006185 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006425 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009664 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008082 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006763 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006681 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008212 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027530 yfhD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007709 mltF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007386 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003037 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002414 yfhD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002630 yfhD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002970 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003006 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002818 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002903 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177087 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002894 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002710 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133443 yfhD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003754 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002886 yfhD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002818 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002892 yfhD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001218 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007660 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002236 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003219 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002215 yfhD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001798 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002964 yfhD CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001180 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010702 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000949 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288702 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006065 yfhD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063548 yfhD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001829 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000838 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003311 yfhD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008147 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144426 yfhD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001488 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006896 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000319 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003004 yfhD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007206 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008303 yfhD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007878 yfhD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005943 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007195 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007079 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006980 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006559 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006336 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007132 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008004 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000300 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000298 yfhD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000365 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007374 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004808 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006884 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007527 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0110981 yfhD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082002 yfhD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003152 yfhD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098144 yfhD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006699 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007698 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006905 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002048 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266912 CDS
Person Approved Go view Shigella boydii 227 ADV-0002851 yfhD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008335 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004499 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003144 yfhD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073930 yfhD CDS
Person Approved Go view Shigella flexneri 301 ABT-0088856 yfhD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002783 yfhD CDS
Person Approved Go view Shigella sonnei 046 ADD-0002879 yfhD CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002526 mltF CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000930 VC0866 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005896 yfhD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001185 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003083 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001579 mltF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001719 yfhD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000307 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240414 yfhD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007744 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002843 yfhD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006420 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000751 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125111 yfhD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004389 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008611 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003697 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008578 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004804 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030979 yfhD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007100 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001470 yfhD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002716 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005451 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005102 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002976 yfhD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003577 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001459 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018271 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001982 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22645mutantTn5 InsertionRequest the StrainABE-0008417mltFyfhD::Tn5KAN-I-SceI at position 198 in Plus orientation ,+ pKD460Blattner Laboratory
FB23177mutantTn5 InsertionRequest the StrainABE-0008417mltFyfhD::Tn5KAN-I-SceI at position 198 in Plus orientation ,- pKD46 C to T at position 1955Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2690801 to 2702357
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008409glrKCDScomplement26896712691098Upstream
ABE-0047261glmYncRNAcomplement26911572691340Upstream
ABE-0008412purLCDScomplement26916562695543Upstream
ABE-0008417mltFCDSforward26958012697357Matches
ABE-0008419tadACDScomplement26973542697857Overlaps Downstream
ABE-0008421pgpCCDScomplement26979152698550Downstream
ABE-0008428yfhHCDSforward26987592699607Downstream
ABE-0008431yfhLCDSforward26996632699923Downstream
ABE-0285224shoBCDScomplement27001172700197Downstream
ABE-0285190ohsCncRNAforward27005202700596Downstream
ABE-0008433acpSCDScomplement27006182700998Downstream
ABE-0008435pdxJCDScomplement27009982701729Downstream
ABE-0008438recOCDScomplement27017412702469Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.