Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008433 (acpS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008433 showshow history
Names
acpS JW2547 ECK2561 dpj b2563
Product
holo-[acyl-carrier-protein] synthase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2700618 2700998 381 127
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000938
EnteroFam0008433: Trusted threshold=327.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004568 (IPR004568 Phosphopantetheine-protein transferase domain) Apr 2008
Automated Process Approved IPR008278 (IPR008278 4'-phosphopantetheinyl transferase domain) Apr 2008
Automated Process Approved IPR002582 (IPR002582 Holo-[acyl carrier protein] synthase) Jul 2018
Automated Process Approved IPR037143 (IPR037143 4'-phosphopantetheinyl transferase domain superfamily) Jul 2018
Automated Process Approved PF01648 (PF01648 4'-phosphopantetheinyl transferase superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009059 macromolecule biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008897 holo-[acyl-carrier-protein] synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name acpS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym dpj Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2561 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2547 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2563 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product holo-[acyl-carrier-protein] synthase 1 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name holo-[acyl-carrier-protein] synthase (CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name Holo-ACP(acyl-carrier-protein) synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Protein Family
Person Approved EnteroFam EnteroFam0008433: Trusted threshold=327.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000938
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004568 Phosphopantetheine-protein transferase domain Protein Sequence Similarity - InterPro Domain: IPR004568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008278 4'-phosphopantetheinyl transferase domain Protein Sequence Similarity - InterPro Domain: IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002582 Holo-[acyl carrier protein] synthase Protein Sequence Similarity - InterPro Domain: IPR002582
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR037143 4'-phosphopantetheinyl transferase domain superfamily Protein Sequence Similarity - InterPro Domain: IPR037143
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01648 4'-phosphopantetheinyl transferase superfamily Protein Sequence Similarity - PFAM Model Name: PF01648
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.8.7 Published Annotation - Swiss-Prot Accession Number: P24224 Feb 2006
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P24224 Published Annotation - Swiss-Prot Accession Number: P24224 Jan 2005
Automated Process Approved db xref GeneID:947037 Published Annotation - Entrez Gene Database ID: 947037
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788916 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P24224 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008433 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10247 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Fatty acid and phosphatidic acid biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase; GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75616.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009059 macromolecule biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008897 holo-[acyl-carrier-protein] synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004568
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000938 acpS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000362 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000274 acpS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000670 acpS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000702 acpS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001604 acpS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002220 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000946 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129526 acpS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104963 acpS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104367 acpS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003307 acpS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000661 acpS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003401 acpS CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004088 acpS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005663 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020362 acpS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003160 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005100 acpS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304042 acpS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002815 acpS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001041 acpS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002976 acpS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006688 acpS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002585 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008576 acpS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002542 acpS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001752 acpS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006648 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008962 acpS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008310 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079230 acpS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002926 acpS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003404 acpS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006663 acpS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007782 acpS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003008 acpS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007283 acpS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000911 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007142 acpS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005661 acpS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005136 acpS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006529 acpS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008638 acpS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006180 acpS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006430 acpS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009659 acpS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008087 acpS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006768 acpS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006686 acpS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008217 acpS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027536 acpS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009275 acpS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007393 acpS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003032 acpS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002635 acpS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002962 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003014 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002980 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002909 acpS CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177092 acpS CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002899 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002715 acpS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133448 acpS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003760 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002892 acpS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002829 acpS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001771 acpS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002897 acpS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001224 acpS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007669 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002241 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003224 acpS CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002220 acpS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001793 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002969 acpS CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001174 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010708 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000944 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288080 acpS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006070 acpS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063563 acpS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001896 acpS CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002022 acpS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003328 acpS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008164 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144469 acpS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006906 acpS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000312 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003014 acpS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007216 acpS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008338 acpS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007912 acpS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005933 acpS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007205 acpS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007089 acpS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006970 acpS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006569 acpS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006346 acpS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007142 acpS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007994 acpS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000290 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000288 acpS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000355 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007384 acpS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004798 acpS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006894 acpS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007537 acpS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111010 acpS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081992 acpS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003162 acpS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098169 acpS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006689 acpS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007688 acpS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006915 acpS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002039 acpS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264918 acpS CDS
Person Approved Go view Shigella boydii 227 ADV-0002856 acpS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008340 acpS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004516 acpS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003212 acpS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073952 acpS CDS
Person Approved Go view Shigella flexneri 301 ABT-0088876 acpS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002806 acpS CDS
Person Approved Go view Shigella sonnei 046 ADD-0002939 acpS CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002531 acpS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002550 VC2457 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000356 acpS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005886 acpS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001193 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003054 acpS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001588 acpS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001726 acpS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000298 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240402 acpS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007737 acpS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002850 acpS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006427 acpS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000758 acpS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125134 acpS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004412 acpS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008604 acpS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003691 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008585 acpS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004797 acpS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030971 acpS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007093 acpS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001463 acpS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001851 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005444 acpS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005096 acpS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002982 acpS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003583 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001397 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018294 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001987 acpS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2695618 to 2705998
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008417mltFCDSforward26958012697357Downstream
ABE-0008419tadACDScomplement26973542697857Downstream
ABE-0008421pgpCCDScomplement26979152698550Downstream
ABE-0008428yfhHCDSforward26987592699607Downstream
ABE-0008431yfhLCDSforward26996632699923Downstream
ABE-0285224shoBCDScomplement27001172700197Downstream
ABE-0285190ohsCncRNAforward27005202700596Downstream
ABE-0008433acpSCDScomplement27006182700998Matches
ABE-0008435pdxJCDScomplement27009982701729Overlaps Upstream
ABE-0008438recOCDScomplement27017412702469Upstream
ABE-0008440eraCDScomplement27024812703386Upstream
ABE-0008448rncCDScomplement27033832704063Upstream
ABE-0008450lepBCDScomplement27043352705309Upstream
ABE-0008452lepACDScomplement27053252707124Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.