Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008435 (pdxJ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008435 showshow history
Names
pdxJ JW2548 ECK2562 b2564
Product
pyridoxine 5'-phosphate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2700998 2701729 732 244
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000939
EnteroFam0008435: Trusted threshold=641.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR004569 (IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ) Apr 2008
Automated Process Approved IPR036130 (IPR036130 Pyridoxine 5'-phosphate synthase) Jul 2018
Automated Process Approved PF03740 (PF03740 Pyridoxal phosphate biosynthesis protein PdxJ) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008615 pyridoxine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004569
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004569
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0033856 pyridoxine 5'-phosphate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004569, IPR036130
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pdxJ Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2548 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2562 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2564 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product pyridoxine 5'-phosphate synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name carries out condensation and ring closure step after PdxA in pyridoxine biosynthesis Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name pyridoxine biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008435: Trusted threshold=641.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000939
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Protein Sequence Similarity - PFAM Model Name: PF03740
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036130 Pyridoxine 5'-phosphate synthase Protein Sequence Similarity - InterPro Domain: IPR036130
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ Protein Sequence Similarity - InterPro Domain: IPR004569
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.6.99.2 Protein Sequence Similarity - InterPro Domain: IPR004569
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 1.5.3.6 (metabolism; building block biosynthesis; cofactor, small molecule carrier; pyridoxine (vitamin B6)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A794 Published Annotation - Swiss-Prot Accession Number: P0A794 Jan 2006
Automated Process Approved db xref EcoGene:EG10693 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947039 Published Annotation - Entrez Gene Database ID: 947039
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0008435 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788917 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A794 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Pyridoxine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note pyridoxine biosynthesis; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0008615 - pyridoxine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75617.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008615 pyridoxine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004569
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004569
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0033856 pyridoxine 5'-phosphate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004569, IPR036130
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000939 pdxJ CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000363 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000487 pdxJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000304 pdxJ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001462 pdxJ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000439 pdxJ CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002219 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000947 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003308 pdxJ CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000660 pdxJ CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003402 pdxJ CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004089 pdxJ CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005662 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020361 pdxJ CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003161 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005099 pdxJ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304044 pdxJ CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002816 pdxJ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001040 pdxJ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002975 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006687 pdxJ CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002586 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008575 pdxJ CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002543 pdxJ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001751 pdxJ CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006647 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008963 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008309 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079231 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002927 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003405 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006662 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007783 pdxJ CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003009 pdxJ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007284 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000912 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007143 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005662 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005137 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006528 pdxJ CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008639 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006179 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006431 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009658 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008088 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006769 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006687 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008218 pdxJ CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027537 pdxJ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009274 pdxJ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007394 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003031 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002419 pdxJ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002636 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002961 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003015 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002981 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002910 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177093 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002900 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002716 pdxJ CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133449 pdxJ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003761 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002893 pdxJ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002830 pdxJ CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001770 pdxJ CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002898 pdxJ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001225 pdxJ CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007670 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002242 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003225 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002221 pdxJ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001792 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002970 pdxJ CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001173 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010709 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000943 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288079 pdxJ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006071 pdxJ CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063564 pdxJ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001926 pdxJ CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002023 pdxJ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003329 pdxJ CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008165 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144471 pdxJ CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004287 pdxJ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006907 pdxJ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000311 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003015 pdxJ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007217 pdxJ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008340 pdxJ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007914 pdxJ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005932 pdxJ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007206 pdxJ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007090 pdxJ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006969 pdxJ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006570 pdxJ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006347 pdxJ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007143 pdxJ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007993 pdxJ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000289 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000287 pdxJ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000354 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007385 pdxJ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004797 pdxJ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006895 pdxJ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007538 pdxJ CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111012 pdxJ CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081991 pdxJ CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003163 pdxJ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098171 pdxJ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006688 pdxJ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007687 pdxJ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006916 pdxJ CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002038 pdxJ CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264917 pdxJ CDS
Person Approved Go view Shigella boydii 227 ADV-0002857 pdxJ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008341 pdxJ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004517 pdxJ CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003213 pdxJ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073953 pdxJ CDS
Person Approved Go view Shigella flexneri 301 ABT-0088877 pdxJ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002807 pdxJ CDS
Person Approved Go view Shigella sonnei 046 ADD-0002940 pdxJ CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002532 pdxJ CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002551 VC2458 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000355 pdxJ CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005885 pdxJ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001194 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003052 pdxJ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001589 pdxJ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001727 pdxJ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000297 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240401 pdxJ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007736 pdxJ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002851 pdxJ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006428 pdxJ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000759 pdxJ CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125136 pdxJ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004413 pdxJ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008603 pdxJ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003690 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008586 pdxJ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004796 pdxJ CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030970 pdxJ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007092 pdxJ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001462 pdxJ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001852 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005443 pdxJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005095 pdxJ CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002983 pdxJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003584 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001396 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018296 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001988 pdxJ CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0008435 pdxJ lambda repressor assay Doodle - bnumber: b2564 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23734mutantTn5 InsertionRequest the StrainABE-0008435pdxJpdxJ::Tn5KAN-I-SceI at position 493 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2695998 to 2706729
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008417mltFCDSforward26958012697357Downstream
ABE-0008419tadACDScomplement26973542697857Downstream
ABE-0008421pgpCCDScomplement26979152698550Downstream
ABE-0008428yfhHCDSforward26987592699607Downstream
ABE-0008431yfhLCDSforward26996632699923Downstream
ABE-0285224shoBCDScomplement27001172700197Downstream
ABE-0285190ohsCncRNAforward27005202700596Downstream
ABE-0008433acpSCDScomplement27006182700998Overlaps Downstream
ABE-0008435pdxJCDScomplement27009982701729Matches
ABE-0008438recOCDScomplement27017412702469Upstream
ABE-0008440eraCDScomplement27024812703386Upstream
ABE-0008448rncCDScomplement27033832704063Upstream
ABE-0008450lepBCDScomplement27043352705309Upstream
ABE-0008452lepACDScomplement27053252707124Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.