Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008471 (nadB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008471 showshow history
Names
nadB nic nicB JW2558 ECK2572 b2574
Product
L-aspartate oxidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2710420 2712042 1623 541
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000949
EnteroFam0008471: Trusted threshold=1502.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004112 (IPR004112 (DEPRECATED) Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal) Apr 2008
Automated Process Approved IPR013027 (IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase) Apr 2008
Automated Process Approved IPR001100 (IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I) Apr 2008
Automated Process Approved IPR003953 (IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain) Apr 2008
Automated Process Approved IPR005288 (IPR005288 L-aspartate oxidase) Apr 2008
Automated Process Approved IPR015939 (IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal) Jul 2018
Automated Process Approved IPR036188 (IPR036188 FAD/NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR037099 (IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily) Jul 2018
Automated Process Approved IPR027477 (IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily) Jul 2018
Automated Process Approved PF02910 (PF02910 Fumarate reductase flavoprotein C-term) Jul 2018
Automated Process Approved PF00890 (PF00890 FAD binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009435 NAD biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015939, IPR005288, IPR037099
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009435 NAD biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005288
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004112
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005288
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008734 L-aspartate oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005288
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004112
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name nadB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2572 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym nic Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2558 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym nicB Published Annotation - GenBank Accession Number: AL590842
Reference: Yersinia pestis CO92 		Sep 2007
Person Approved locus tag b2574 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product L-aspartate oxidase Published Annotation - EcoCyc Accession Number: EG10631
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name quinolinate synthase, L-aspartate oxidase (B protein) subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name quinolinate synthetase, B protein, catalytic and NAD/flavoprotein subunit Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name quinolinate synthetase, B protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008471: Trusted threshold=1502.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000949
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004112 (DEPRECATED) Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal Protein Sequence Similarity - InterPro Domain: IPR004112
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I Protein Sequence Similarity - InterPro Domain: IPR001100
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR013027
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005288 L-aspartate oxidase Protein Sequence Similarity - InterPro Domain: IPR005288
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015939
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR037099
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Protein Sequence Similarity - InterPro Domain: IPR003953
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036188 FAD/NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036188
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Protein Sequence Similarity - InterPro Domain: IPR027477
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02910 Fumarate reductase flavoprotein C-term Protein Sequence Similarity - PFAM Model Name: PF02910
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00890 FAD binding domain Protein Sequence Similarity - PFAM Model Name: PF00890
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.4.3.16 Published Annotation - Swiss-Prot Accession Number: P10902 Feb 2006
Person Uncurated MultiFun 1.5.3.7 (metabolism; building block biosynthesis; cofactor, small molecule carrier; nicotinamide adenine dinucleotide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947049 Published Annotation - Entrez Gene Database ID: 947049
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P10902 Published Annotation - Swiss-Prot Accession Number: P10902 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P10902 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008471 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788928 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10631 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Pyridine nucleotide Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note quinolinate synthetase, B protein; GO_process: GO:0009435 - NAD biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75627.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 5.41
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 4.48
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009435 NAD biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005288
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004112
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015939, IPR005288, IPR037099
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0009435 NAD biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005288
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008734 L-aspartate oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005288
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004112
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000949 nadB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000373 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001876 nadB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001790 nadB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000668 nadB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001778 nadB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002209 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000957 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003319 nadB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000650 nadB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003413 nadB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004099 nadB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005651 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020350 nadB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003171 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005089 nadB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001028 nadB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002965 nadB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006676 nadB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002596 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008564 nadB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002553 nadB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001741 nadB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006635 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008974 nadB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008298 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079241 nadB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002937 nadB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003415 nadB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006651 nadB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007794 nadB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003019 nadB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007295 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000923 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007154 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005673 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005148 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006517 nadB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008650 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006168 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006442 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009648 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008099 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010593 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009399 nadB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010635 nadB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027548 nadB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009263 nadB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007405 nadB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003020 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002429 nadB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002646 nadB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002950 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003026 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002992 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002920 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177103 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002910 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002726 nadB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133459 nadB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003772 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002904 nadB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002841 nadB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001759 nadB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002908 nadB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001235 nadB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007681 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002252 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003235 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002232 nadB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001782 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002980 nadB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001163 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010719 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000933 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288068 nadB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006081 nadB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063574 nadB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001919 nadB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000842 nadB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003339 nadB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008176 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144496 nadB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004298 nadB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006918 nadB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000292 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003096 nadB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007229 nadB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008381 nadB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007952 nadB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005921 nadB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007218 nadB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008665 nadB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006937 nadB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006581 nadB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006358 nadB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007214 nadB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009250 nadB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000279 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000277 nadB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000341 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007397 nadB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008709 nadB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006908 nadB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007551 nadB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111038 nadB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081981 nadB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003242 nadB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098349 nadB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006676 nadB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009301 nadB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008896 nadB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002026 nadB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264907 nadB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003223 nadB CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0073963 nadB pseudogene
Person Approved Go view Shigella flexneri 301 ABT-0088887 nadB pseudogene
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002542 nadB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002562 VC2469 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001205 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003011 nadB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001599 nadB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001738 nadB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000287 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240380 nadB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007725 nadB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002940 nadB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006439 nadB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000772 nadB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124378 nadB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004426 nadB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005407 nadB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002446 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006239 nadB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004785 nadB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030959 nadB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007287 nadB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001450 nadB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001864 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005260 nadB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005084 nadB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002994 nadB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003596 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001384 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018354 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001999 nadB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20859mutantTn5 InsertionRequest the StrainABE-0008471nadBnadB::Tn5KAN-I-SceI at position 880 in Plus orientation ,- pKD465Blattner Laboratory
FB20860mutantTn5 InsertionRequest the StrainABE-0008471nadBnadB::Tn5KAN-I-SceI at position 880 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2705420 to 2717042
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008452lepACDScomplement27053252707124Upstream
ABE-0008457rseCCDScomplement27073222707801Upstream
ABE-0008459rseBCDScomplement27077982708754Upstream
ABE-0008462rseACDScomplement27087542709404Upstream
ABE-0008467rpoECDScomplement27094372710012Upstream
ABE-0285777rseDCDScomplement27100092710164Upstream
ABE-0008471nadBCDSforward27104202712042Matches
ABE-0008473yfiCCDScomplement27120272712764Overlaps Downstream
ABE-0008478srmBCDSforward27128962714230Downstream
ABE-0285531repeat_regionforward27142832714380Downstream
ABE-0008483yfiECDScomplement27144392715320Downstream
ABE-0008487eamBCDSforward27154232716010Downstream
ABE-0008489grcACDScomplement27160662716449Downstream
ABE-0008495ungCDSforward27167542717443Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.