Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008489 (grcA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008489 showshow history
Names
grcA yfiD JW2563 ECK2577 b2579
Product
pyruvate formate lyase subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2716066 2716449 384 128
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000952
EnteroFam0008489: Trusted threshold=351.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001150 (IPR001150 Glycine radical domain) Apr 2008
Automated Process Approved IPR011140 (IPR011140 Autonomous glycyl radical cofactor GrcA) Apr 2008
Automated Process Approved PF01228 (PF01228 Glycine radical) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name grcA Published Annotation - PubMed ID: 28948108
Reference: Escherichia coli K-12 		Oct 2018
Person Approved synonym ECK2577 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yfiD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2563 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2579 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product pyruvate formate lyase subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name autonomous glycyl radical cofactor Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name putative formate acetyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008489: Trusted threshold=351.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000952
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001150 Glycine radical domain Protein Sequence Similarity - InterPro Domain: IPR001150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01228 Glycine radical Protein Sequence Similarity - PFAM Model Name: PF01228
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011140 Autonomous glycyl radical cofactor GrcA Protein Sequence Similarity - InterPro Domain: IPR011140
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947068 Published Annotation - Entrez Gene Database ID: 947068
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P68066 Published Annotation - Swiss-Prot Accession Number: P68066 Jan 2006
Automated Process Approved db xref GI:1788933 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P68066 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11784 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008489 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of lysU ASAP:13520:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated molecular interaction Interacts with the product of tpiA ASAP:12799:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Uncurated molecular interaction Interacts with the product of pflB ASAP:3071:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note putative formate acetyltransferase; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75632.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001150
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000952 grcA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000376 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001692 yfiD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001638 grcA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001635 yfiD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001664 grcA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002206 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000961 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003322 grcA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000647 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003416 grcA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004103 grcA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005648 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020347 grcA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003174 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005086 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001025 grcA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002958 grcA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006671 grcA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002601 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008559 grcA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002558 yfiD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001736 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006630 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008989 grcA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008293 GrcA CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079246 yfiD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002942 grcA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003421 yfiD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006645 grcA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007800 grcA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003024 yfiD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007300 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000928 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007159 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005678 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005153 grcA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008655 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006163 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006447 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009643 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008104 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010588 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009406 grcA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010640 grcA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027553 yfiD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009258 grcA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007411 grcA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003015 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002434 yfiD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002651 yfiD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002945 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003031 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002997 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002925 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177108 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002916 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002731 grcA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133464 yfiD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003777 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002909 yfiD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002844 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001756 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002911 yfiD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001238 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007684 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002255 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003238 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002235 grcA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001778 CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001160 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010722 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000930 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288065 yfiD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006085 yfiD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063577 yfiD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001883 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002032 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003342 yfiD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008179 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006923 grcA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000289 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003101 yfiD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007235 grcA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008399 yfiD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007970 yfiD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005915 grcA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007223 grcA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008660 grcA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006931 grcA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006587 grcA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006364 grcA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007220 grcA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009256 grcA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000274 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000272 yfiD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000335 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007402 grcA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008702 grcA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006914 grcA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007557 grcA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111052 yfiD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081976 yfiD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003248 yfiD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098363 yfiD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006671 grcA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009295 grcA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008901 grcA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002021 CDS
Person Approved Go view Shigella boydii 227 ADV-0002878 yfiD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008370 grcA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004534 grcA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003231 yfiD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073968 yfiD CDS
Person Approved Go view Shigella flexneri 301 ABT-0088891 yfiD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002822 yfiD CDS
Person Approved Go view Shigella sonnei 046 ADD-0002958 yfiD CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002545 grcA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002454 VC2361 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001208 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002993 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001604 grcA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001743 yfiD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000284 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240373 yfiD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007718 grcA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002933 yfiD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006446 grcA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000776 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124363 yfiD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004433 grcA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005401 grcA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006232 grcA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004778 grcA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030952 yfiD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007280 grcA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001445 yfiD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001869 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005267 grcA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005078 grcA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002999 yfiD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003603 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001377 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018371 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002002 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2711066 to 2721449
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008471nadBCDSforward27104202712042Downstream
ABE-0008473yfiCCDScomplement27120272712764Downstream
ABE-0008478srmBCDSforward27128962714230Downstream
ABE-0285531repeat_regionforward27142832714380Downstream
ABE-0008483yfiECDScomplement27144392715320Downstream
ABE-0008487eamBCDSforward27154232716010Downstream
ABE-0008489grcACDScomplement27160662716449Matches
ABE-0008495ungCDSforward27167542717443Upstream
ABE-0285532repeat_regionforward27174582717483Upstream
ABE-0008497yfiFCDScomplement27174912718528Upstream
ABE-0008501trxCCDSforward27187352719154Upstream
ABE-0008503tapTCDSforward27192232719921Upstream
ABE-0008506patZCDSforward27199532722613Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.