Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008501 (trxC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008501 showshow history
Names
trxC yfiG JW2566 ECK2580 b2582
Product
thioredoxin 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2718735 2719154 420 140
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000955
EnteroFam0008501: Trusted threshold=378.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Apr 2008
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Apr 2008
Automated Process Approved IPR006662 (IPR006662 (DEPRECATED) Thioredoxin-like subdomain) Apr 2008
Automated Process Approved IPR013766 (IPR013766 Thioredoxin domain) Apr 2008
Automated Process Approved IPR015467 (IPR015467 (DEPRECATED) Thioredoxin, core) Apr 2008
Automated Process Approved IPR005746 (IPR005746 Thioredoxin) Apr 2008
Automated Process Approved IPR036249 (IPR036249 Thioredoxin-like superfamily) Jul 2018
Automated Process Approved PF00085 (PF00085 Thioredoxin) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006662 glycerol ether metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name trxC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2580 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yfiG Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2566 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2582 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product thioredoxin 2 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name thioredoxin 2, redox factor Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative thioredoxin-like protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008501: Trusted threshold=378.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000955
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013766 Thioredoxin domain Protein Sequence Similarity - InterPro Domain: IPR013766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00085 Thioredoxin Protein Sequence Similarity - PFAM Model Name: PF00085
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005746 Thioredoxin Protein Sequence Similarity - InterPro Domain: IPR005746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006662 (DEPRECATED) Thioredoxin-like subdomain Protein Sequence Similarity - InterPro Domain: IPR006662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015467 (DEPRECATED) Thioredoxin, core Protein Sequence Similarity - InterPro Domain: IPR015467
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036249 Thioredoxin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036249
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.8.1.8 Published Annotation - Swiss-Prot Accession Number: P0AGG4 Feb 2006
Person Uncurated MultiFun 1.6.15.2 (metabolism; macromolecules (cellular constituent) biosynthesis; large molecule carriers; thioredoxin, glutaredoxin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947062 Published Annotation - Entrez Gene Database ID: 947062
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AGG4 Published Annotation - Swiss-Prot Accession Number: P0AGG4 Jan 2006
Automated Process Approved db xref GI:1788936 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGG4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008501 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11887 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative thioredoxin-like protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75635.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006662 glycerol ether metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006662
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005746
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000955 trxC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000488 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001371 trxC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001854 trxC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001578 trxC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001914 trxC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000392 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003293 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003325 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000644 trxC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003419 trxC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004106 trxC_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005396 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015967 trxC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003370 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005082 trxC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304357 trxC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002921 trxC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000971 trxC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002944 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006668 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002604 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008556 trx CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002562 trxC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001733 trxC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006627 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008992 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008290 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079250 trxC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002945 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003424 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006642 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007803 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003027 trxC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007303 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000932 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007162 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005681 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005156 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010195 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008658 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006160 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006450 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009640 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008107 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010585 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009409 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010643 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027557 trxC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009255 trxC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007414 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003012 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002437 trxC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002654 trxC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002941 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003035 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003001 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002928 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002919 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002734 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133467 trxC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003781 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002913 trxC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004329 trxC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002914 trxC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001241 trxC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005392 CDS
Automated Process Approved Go view Pantoea agglomerans IG1 APM-0002301 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0003288 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0002319 trxC CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0001681 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0003084 trxC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001070 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0010773 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0000862 CDS
Person Uncurated Go view Pantoea stewartii DC283 ACV-0291586 trxC pseudogene
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0006125 trxC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063825 trxC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001971 trxC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002081 trxC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004530 trxC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008482 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006926 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000286 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003104 trxC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007238 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008408 trxC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007979 trxC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006690 trxA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007226 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008657 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006928 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006590 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006367 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007223 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009259 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000270 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000268 trxC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000332 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007405 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008699 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006917 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007560 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111063 trxC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081973 trxC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003251 trxC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098373 trxC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006668 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009292 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008904 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001939 trxC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264003 trxC CDS
Person Approved Go view Shigella boydii 227 ADV-0002881 trxC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008367 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004537 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003234 trxC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073971 trxC CDS
Person Approved Go view Shigella flexneri 301 ABT-0088894 trxC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002825 trxC CDS
Person Approved Go view Shigella sonnei 046 ADD-0002961 trxC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002548 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003642 VCA0752 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002808 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009380 trxC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003790 trxC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001790 trxC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003750 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235686 trxC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007585 trxC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003311 trxC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007045 trxC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000266 trxC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126320 trxC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007377 trxC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006763 trxC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001825 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005231 trxC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004383 trxC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030570 trxC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007488 trxC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001012 trxC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003482 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005033 trxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007211 trxC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000905 trxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001060 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003960 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018382 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002005 trxC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22765mutantTn5 InsertionRequest the StrainABE-0008501trxCtrxC::Tn5(KAN-I-SceI) at position 258 in Minus orientation ,+ pKD46 0Blattner Laboratory
FB23181mutantTn5 InsertionRequest the StrainABE-0008501trxCtrxC::Tn5KAN-I-SceI at position 258 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2713735 to 2724154
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008478srmBCDSforward27128962714230Upstream
ABE-0285531repeat_regionforward27142832714380Upstream
ABE-0008483yfiECDScomplement27144392715320Upstream
ABE-0008487eamBCDSforward27154232716010Upstream
ABE-0008489grcACDScomplement27160662716449Upstream
ABE-0008495ungCDSforward27167542717443Upstream
ABE-0285532repeat_regionforward27174582717483Upstream
ABE-0008497yfiFCDScomplement27174912718528Upstream
ABE-0008501trxCCDSforward27187352719154Matches
ABE-0008503tapTCDSforward27192232719921Downstream
ABE-0008506patZCDSforward27199532722613Downstream
ABE-0285756pssLCDSforward27227022722743Downstream
ABE-0008510pssACDSforward27227272724082Downstream
ABE-0008513yfiMCDSforward27241282724451Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.