Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008510 (pssA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008510 showshow history
Names
pssA pss JW2569 ECK2583 b2585
Product
phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2722727 2724082 1356 452
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000958
EnteroFam0008510: Trusted threshold=1199.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001736 (IPR001736 Phospholipase D/Transphosphatidylase) Apr 2008
Automated Process Approved IPR025202 (IPR025202 Phospholipase D-like domain) Jul 2018
Automated Process Approved IPR016270 (IPR016270 CDP-alcohol phosphatidyltransferase class-II family) Jul 2018
Automated Process Approved PF13091 (PF13091 PLD-like domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0032049 cardiolipin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016270
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008444 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016270
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pssA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW2569 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2583 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym pss Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2585 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name phosphatidylserine synthase; phospholipid synthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008510: Trusted threshold=1199.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000958
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF13091 PLD-like domain Protein Sequence Similarity - PFAM Model Name: PF13091
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016270 CDP-alcohol phosphatidyltransferase class-II family Protein Sequence Similarity - InterPro Domain: IPR016270
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001736 Phospholipase D/Transphosphatidylase Protein Sequence Similarity - InterPro Domain: IPR001736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR025202 Phospholipase D-like domain Protein Sequence Similarity - InterPro Domain: IPR025202
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.8.8 Published Annotation - Swiss-Prot Accession Number: P23830 Feb 2006
Automated Process Uncurated EC number 2.7.8.5 Published Annotation - Database Name: EC2GO: GO:0008444
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.1 (metabolism; macromolecules (cellular constituent) biosynthesis; phospholipid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082134 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P23830 Published Annotation - Swiss-Prot Accession Number: P23830 Jan 2005
Automated Process Approved db xref GeneID:947059 Published Annotation - Entrez Gene Database ID: 947059
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23830 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008510 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10781 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Macromolecule synthesis, modification: Phospholipids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of yfiF ASAP:8497:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note phosphatidylserine synthase; phospholipid synthesis; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0008654 - phospholipid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75638.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0032049 cardiolipin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016270
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008444 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016270
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000958 pssA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000491 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000610 pssA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000523 pssA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000188 pssA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000918 pssA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000389 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003296 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003329 pssA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000641 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003422 pssA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004109 pssA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005393 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015964 pssA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003373 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005079 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304365 pssA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002924 pssA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000968 pssA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002941 pssA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006665 pssA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002607 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008553 pssA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002565 pssA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001730 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006624 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008995 pssA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008287 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079253 pssA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002948 pssA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003427 pssA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006639 pssA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007806 pssA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003030 pssA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007306 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000935 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007165 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005684 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005159 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010192 pssA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008661 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006157 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006453 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010570 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008110 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007961 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009412 pssA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010646 pssA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027560 pssA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009252 pssA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007417 pssA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003009 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002440 pssA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002657 pssA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002938 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003038 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003004 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002931 pssA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177115 pssA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002922 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002737 pssA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133471 pssA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003784 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002916 pss CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002901 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004332 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002917 pssA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001244 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005389 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002305 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003292 pssA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002322 pssA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001678 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003087 pssA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001067 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010777 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000859 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291331 pssA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006128 pssA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063828 pssA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002007 pssA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002082 pssA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004533 pssA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008485 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139642 pssA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003521 pssA-2 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006929 pssA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000283 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003107 pssA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007241 pssA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008415 pssA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007986 pssA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006687 pssA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007229 pssA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008654 pssA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006925 pssA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006593 pssA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006370 pssA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007226 pssA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009262 pssA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000267 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0000265 pssA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000329 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007408 pssA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008696 pssA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006920 pssA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007564 pssA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111069 pssA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0081970 pssA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003255 pssA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098380 pssA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006665 pssA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009288 pssA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008907 pssA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001936 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265977 pssA CDS
Person Approved Go view Shigella boydii 227 ADV-0002884 pssA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008364 pssA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004541 pssA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003237 pssA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073974 pssA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088897 pssA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002828 pssA CDS
Person Approved Go view Shigella sonnei 046 ADD-0002964 pssA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002551 pssA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000336 VC0315 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002274 pssA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002804 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009388 pss CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003793 pssA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001787 pssA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003747 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235683 pssA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007588 pssA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003314 pssA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007048 pssA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004275 pssA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126326 pssA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007374 pssA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006760 pssA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001828 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005234 pssA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004380 pssA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030567 pssA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007485 pssA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001009 pssA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003485 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005030 pssA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007214 pssA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000902 pssA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001057 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003963 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018397 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002008 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2717727 to 2729082
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008497yfiFCDScomplement27174912718528Upstream
ABE-0008501trxCCDSforward27187352719154Upstream
ABE-0008503tapTCDSforward27192232719921Upstream
ABE-0008506patZCDSforward27199532722613Upstream
ABE-0285756pssLCDSforward27227022722743Overlaps Upstream
ABE-0008510pssACDSforward27227272724082Matches
ABE-0008513yfiMCDSforward27241282724451Downstream
ABE-0008515kgtPCDScomplement27244482725746Downstream
ABE-0285264yfiSpseudogeneforward27259282725987Downstream
ABE-0008519rrfGrRNAcomplement27260692726188Downstream
ABE-0008521rrlGrRNAcomplement27262812729184Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.