Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008515 (kgtP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008515 showshow history
Names
kgtP JW2571 ECK2585 witA b2587
Product
alpha-ketoglutarate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2724448 2725746 1299 433
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005829 (IPR005829 Sugar transporter, conserved site) Apr 2008
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR005828 (IPR005828 Major facilitator, sugar transporter-like) Apr 2008
Automated Process Approved IPR004736 (IPR004736 MFS transporter, metabolite:H symporter) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF00083 (PF00083 Sugar (and other) transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005828, IPR004736
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005828, IPR004736
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name kgtP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym witA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK2585 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2571 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2587 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product alpha-ketoglutarate transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name alpha-ketoglutarate permease Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name alpha-ketoglutarate permease (MFS family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005828 Major facilitator, sugar transporter-like Protein Sequence Similarity - InterPro Domain: IPR005828
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00083 Sugar (and other) transporter Protein Sequence Similarity - PFAM Model Name: PF00083
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004736 MFS transporter, metabolite:H symporter Protein Sequence Similarity - InterPro Domain: IPR004736
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005829 Sugar transporter, conserved site Protein Sequence Similarity - InterPro Domain: IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.11 (transport; substrate; alpha-ketoglutarate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947069 Published Annotation - Entrez Gene Database ID: 947069
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AEX3 Published Annotation - Swiss-Prot Accession Number: P0AEX3 Jan 2006
Automated Process Approved db xref GI:1788942 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEX3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008515 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10522 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note alpha-ketoglutarate permease; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75640.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005828, IPR004736
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005828, IPR004736
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002529 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002378 kgtP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002312 kgtP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002650 kgtP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002181 kgtP CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003331 kgtP CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000640 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003424 kgtP CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004111 kgtP CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0005390 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015962 kgtP CDS
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0003374 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005077 CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0304370 kgtP CDS
Automated Process Approved Go view Erwinia amylovora ATCC BAA-2158 APN-0002926 kgtP CDS
Person Uncurated Go view Erwinia amylovora CFBP 1430 AKH-0002806 kgtP CDS
Person Uncurated Go view Erwinia billingiae 661 [T] AKT-0003534 kgtP CDS
Person Uncurated Go view Erwinia pyrifoliae DSM 12163 [T] AJZ-0000997 kgtP CDS
Person Uncurated Go view Erwinia pyrifoliae Ep1/96 AKA-0000947 kgtP CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000966 kgtP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002939 kgtP CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002609 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008551 kgtP CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002567 kgtP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001728 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006621 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008997 kgtP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008285 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079255 kgtP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002950 kgtP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003429 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006637 kgtP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007808 kgtP CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003032 kgtP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007308 kgtP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000937 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007167 kgtP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005686 kgtP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005161 kgtP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010190 kgtP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008663 kgtP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006155 kgtP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006455 kgtP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010572 kgtP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008112 kgtP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007963 kgtP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009414 kgtP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010648 kgtP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027562 kgtP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009250 kgtP_1 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003007 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002442 kgtP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002659 kgtP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002936 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003040 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002933 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002924 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002739 kgtP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133473 kgtP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003786 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002918 kgtP CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000001 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002919 kgtP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001246 CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0005388 CDS
Automated Process Approved Go view Pantoea agglomerans IG1 APM-0002307 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0003294 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0002323 kgtP CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0001677 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0003088 kgtP CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0001066 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0010778 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0000857 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291330 kgtP CDS
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0006130 kgtP CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063830 kgtP CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0002008 kgtP CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000901 kgtP CDS
Automated Process Approved Go view Pectobacterium parmentieri WPP163 AFJ-0004535 kgtP CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0008487 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004380 pcaT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006931 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000281 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003109 kgtP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007243 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008420 kgtP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007990 kgtP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006685 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007231 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008652 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006923 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006595 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006372 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007228 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009264 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000265 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000263 kgtP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000327 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007410 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008694 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006922 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007566 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111074 kgtP CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0081968 kgtP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003257 kgtP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098385 kgtP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006663 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009286 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008909 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001935 CDS
Person Approved Go view Shigella boydii 227 ADV-0002886 kgtP CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008378 kgtP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004543 kgtP CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003239 kgtP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073976 kgtP CDS
Person Approved Go view Shigella flexneri 301 ABT-0088899 kgtP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0002830 kgtP CDS
Person Approved Go view Shigella sonnei 046 ADD-0002966 kgtP CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002553 kgtP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002250 proP_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001311 proP_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002570 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0018406 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002009 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20863mutantTn5 InsertionRequest the StrainABE-0008515kgtPkgtP::Tn5KAN-I-SceI at position 1092 in Plus orientation ,- pKD465Blattner Laboratory
FB20864mutantTn5 InsertionRequest the StrainABE-0008515kgtPkgtP::Tn5KAN-I-SceI at position 1092 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2719448 to 2730746
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008503tapTCDSforward27192232719921Downstream
ABE-0008506patZCDSforward27199532722613Downstream
ABE-0285756pssLCDSforward27227022722743Downstream
ABE-0008510pssACDSforward27227272724082Downstream
ABE-0008513yfiMCDSforward27241282724451Overlaps Downstream
ABE-0008515kgtPCDScomplement27244482725746Matches
ABE-0285264yfiSpseudogeneforward27259282725987Upstream
ABE-0008519rrfGrRNAcomplement27260692726188Upstream
ABE-0008521rrlGrRNAcomplement27262812729184Upstream
ABE-0008523gltWtRNAcomplement27293692729444Upstream
ABE-0008525rrsGrRNAcomplement27296162731157Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.