Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008545 (pheA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008545 showshow history
Names
pheA JW2580 ECK2596 b2599
Product
chorismate mutase/prephenate dehydratase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2737745 2738905 1161 387
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000964
EnteroFam0008545: Trusted threshold=1036.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002701 (IPR002701 Chorismate mutase II, prokaryotic-type) Apr 2008
Automated Process Approved IPR001086 (IPR001086 Prephenate dehydratase) Apr 2008
Automated Process Approved IPR008242 (IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase) Apr 2008
Automated Process Approved IPR010952 (IPR010952 Chorismate mutase, gammaproteobacteria) Apr 2008
Automated Process Approved IPR036263 (IPR036263 Chorismate mutase type II superfamily) Jul 2018
Automated Process Approved PF01817 (PF01817 Chorismate mutase type II) Jul 2018
Automated Process Approved PF00800 (PF00800 Prephenate dehydratase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009094 L-phenylalanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009094 L-phenylalanine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0046417 chorismate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002701, IPR036263
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006571 tyrosine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008242
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004664 prephenate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004106 chorismate mutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pheA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2596 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2580 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2599 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product chorismate mutase/prephenate dehydratase Experimental - PubMed ID: 4261395
Reference: Escherichia coli K-12 		Mar 2008
Person Uncurated alternate product name bifunctional: chorismate mutase P (N-terminal); prephenate dehydratase (C-terminal) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name chorismate mutase-P and prephenate dehydratase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name fused chorismate mutase P/prephenate dehydratase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0008545: Trusted threshold=1036.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000964
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036263 Chorismate mutase type II superfamily Protein Sequence Similarity - InterPro Domain: IPR036263
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01817 Chorismate mutase type II Protein Sequence Similarity - PFAM Model Name: PF01817
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00800 Prephenate dehydratase Protein Sequence Similarity - PFAM Model Name: PF00800
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010952 Chorismate mutase, gammaproteobacteria Protein Sequence Similarity - InterPro Domain: IPR010952
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase Protein Sequence Similarity - InterPro Domain: IPR008242
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002701 Chorismate mutase II, prokaryotic-type Protein Sequence Similarity - InterPro Domain: IPR002701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001086 Prephenate dehydratase Protein Sequence Similarity - InterPro Domain: IPR001086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.2.1.51 Published Annotation - Swiss-Prot Accession Number: P0A9J8 Feb 2006
Person Approved EC number 5.4.99.5 Published Annotation - Swiss-Prot Accession Number: P0A9J8 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.14 (metabolism; building block biosynthesis; amino acids; tyrosine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.13 (metabolism; building block biosynthesis; amino acids; phenylalanine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A9J8 Published Annotation - Swiss-Prot Accession Number: P0A9J8 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9J8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788951 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008545 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10707 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947081 Published Annotation - Entrez Gene Database ID: 947081
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Amino acid biosynthesis: Phenylalanine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note chorismate mutase-P and prephenate dehydratase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009094 - L-phenylalanine biosynthetic process; GO_process: GO:0006571 - tyrosine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75648.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009094 L-phenylalanine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0009094 L-phenylalanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0046417 chorismate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002701, IPR036263
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006571 tyrosine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008242
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004664 prephenate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001086
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004106 chorismate mutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000201 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000301 pheA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000559 pheA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001958 pheA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001091 pheA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000240 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001768 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129662 pheA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105081 pheA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104503 pheA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003337 pheA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000601 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003435 pheA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004120 pheA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005566 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0016993 pheA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003232 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005071 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304404 pheA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000954 pheA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002738 pheA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002928 pheA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008638 pheA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002624 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008540 pheA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002578 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001717 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006610 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010030 pheA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009577 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079268 pheA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002962 pheA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000021 pheA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010528 pheA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007819 pheA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003047 pheA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007319 pheA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004407 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007179 pheA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005698 pheA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005173 pheA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010178 pheA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008675 pheA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006143 pheA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006467 pheA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010584 pheA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011065 pheA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007974 pheA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009426 pheA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009764 pheA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027572 pheA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009921 pheA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007430 pheA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002449 pheA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002670 pheA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003212 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003066 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003036 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002943 pheA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177129 pheA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002935 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002749 pheA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133485 pheA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005785 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002940 pheA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000467 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001548 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002929 pheA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001253 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007763 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002313 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002534 pheA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002337 pheA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001668 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003100 pheA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001053 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010785 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000769 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291032 pheA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006141 pheA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063651 pheA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001942 pheA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002051 pheA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004223 pheA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008265 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139621 pheA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006978 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000267 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003128 pheA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007254 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008451 pheA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008017 pheA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006672 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007243 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008275 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006911 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008431 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006384 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007240 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005780 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002554 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002526 pheA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003393 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007423 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008904 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006935 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008580 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111102 pheA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084338 pheA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003273 pheA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098415 pheA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006651 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008595 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006656 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000261 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264933 pheA CDS
Person Approved Go view Shigella boydii 227 ADV-0002908 pheA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008396 pheA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008089 pheA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003167 pheA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073994 pheA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088910 pheA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003065 pheA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003008 pheA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000764 VC0705 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002250 pheA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003064 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002628 pheA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003995 pheA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003732 pheA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003293 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235123 pheA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007603 pheA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003330 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007062 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004331 pheA_1 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0256434 pheA pseudogene
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006538 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006747 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003606 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006009 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004365 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0247564 pheA pseudogene
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0247565 pheA_1 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007471 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000994 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003499 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005015 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007227 pheA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000890 pheA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001043 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003978 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003741 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002015 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21854mutantTn5 InsertionRequest the StrainABE-0008545pheApheA::Tn5KAN-I-SceI at position 801 in Minus orientation ,+ pKD460Blattner Laboratory
FB21877mutantTn5 InsertionRequest the StrainABE-0008545pheApheA::Tn5KAN-I-SceI at position 801 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2732745 to 2743905
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008527clpBCDScomplement27316002734173Upstream
ABE-0285191ryfDncRNAcomplement27341532734295Upstream
ABE-0008530yfiHCDScomplement27343032735034Upstream
ABE-0008532rluDCDScomplement27350312736011Upstream
ABE-0008536bamDCDSforward27361462736883Upstream
ABE-0008540raiACDSforward27371542737495Upstream
ABE-0285832raiZncRNAforward27373812737542Upstream
ABE-0008543pheLCDSforward27375992737646Upstream
ABE-0008545pheACDSforward27377452738905Matches
ABE-0285533repeat_regionforward27389152738938Downstream
ABE-0008547tyrACDScomplement27389482740069Downstream
ABE-0008549aroFCDScomplement27400802741150Downstream
ABE-0008565yfiLCDSforward27413602741725Downstream
ABE-0008568yfiRCDSforward27418752742393Downstream
ABE-0008570dgcNCDSforward27423832743609Downstream
ABE-0008572yfiBCDSforward27436252744107Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.