Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0008547 (tyrA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0008547 showshow history
Names
tyrA JW2581 ECK2597 b2600
Product
chorismate mutase/prephenate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2738948 2740069 1122 374
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000965
EnteroFam0008547: Trusted threshold=1073.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR008244 (IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein) Apr 2008
Automated Process Approved IPR002701 (IPR002701 Chorismate mutase II, prokaryotic-type) Apr 2008
Automated Process Approved IPR011277 (IPR011277 Chorismate mutase, T-protein) Apr 2008
Automated Process Approved IPR003099 (IPR003099 Prephenate dehydrogenase) Apr 2008
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR036263 (IPR036263 Chorismate mutase type II superfamily) Jul 2018
Automated Process Approved PF01817 (PF01817 Chorismate mutase type II) Jul 2018
Automated Process Approved PF02153 (PF02153 Prephenate dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0046417 chorismate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002701, IPR036263
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009094 L-phenylalanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003099, IPR011277, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006571 tyrosine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008244
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006571 tyrosine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008244
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0004665 prephenate dehydrogenase (NADP+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003099
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004106 chorismate mutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008244
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008977 prephenate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008244
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name tyrA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2597 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2581 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2600 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product chorismate mutase/prephenate dehydrogenase Experimental - PubMed ID: 4929151
Reference: Escherichia coli K-12 		Mar 2008
Automated Process Approved alternate product name fused chorismate mutase T/prephenate dehydrogenase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name chorismate mutase-T and prephenate dehydrogenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name bifunctional: chorismate mutase T (N-terminal); prephenate dehydrogenase (C-terminal) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0008547: Trusted threshold=1073.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000965
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein Protein Sequence Similarity - InterPro Domain: IPR008244
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036263 Chorismate mutase type II superfamily Protein Sequence Similarity - InterPro Domain: IPR036263
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01817 Chorismate mutase type II Protein Sequence Similarity - PFAM Model Name: PF01817
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02153 Prephenate dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF02153
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002701 Chorismate mutase II, prokaryotic-type Protein Sequence Similarity - InterPro Domain: IPR002701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011277 Chorismate mutase, T-protein Protein Sequence Similarity - InterPro Domain: IPR011277
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003099 Prephenate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR003099
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 5.4.99.5 Published Annotation - Swiss-Prot Accession Number: P07023 Feb 2006
Person Approved EC number 1.3.1.12 Published Annotation - Swiss-Prot Accession Number: P07023 Feb 2006
Automated Process Uncurated EC number 1.3.1.13 Published Annotation - Database Name: EC2GO: GO:0004665
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.14 (metabolism; building block biosynthesis; amino acids; tyrosine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.13 (metabolism; building block biosynthesis; amino acids; phenylalanine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P07023 Published Annotation - Swiss-Prot Accession Number: P07023 Jan 2005
Automated Process Approved db xref GeneID:947115 Published Annotation - Entrez Gene Database ID: 947115
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788952 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11039 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07023 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0008547 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Tyrosine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note chorismate mutase-T and prephenate dehydrogenase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009094 - L-phenylalanine biosynthetic process; GO_process: GO:0006571 - tyrosine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75649.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0046417 chorismate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002701, IPR036263
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006571 tyrosine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009094 L-phenylalanine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003099, IPR011277, IPR008927
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006571 tyrosine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008244
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008244
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0004665 prephenate dehydrogenase (NADP+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003099
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004106 chorismate mutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008244
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008977 prephenate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008244
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000965 tyrA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000202 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000738 tyrA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000812 tyrA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001419 tyrA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001259 tyrA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000241 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001769 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003339 tyrA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000599 tyrA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003436 tyrA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004121 tyrA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005565 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016992 tyrA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003233 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0005069 tyrA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304411 tyrA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000952 tyrA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002739 tyrA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002927 tyrA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008637 tyrA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002625 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008539 tyrA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002579 pheA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001716 tyrA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006609 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010029 tyrA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009576 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079269 tyrA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0002963 tyrA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0000022 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010527 tyrA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007820 tyrA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003048 tyrA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007320 tyrA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004408 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007180 tyrA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005699 tyrA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005174 tyrA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010177 tyrA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0008676 tyrA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006142 tyrA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006468 tyrA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010585 tyrA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011066 tyrA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007975 tyrA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009427 tyrA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009765 tyrA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027573 tyrA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009922 tyrA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007431 tyrA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002450 tyrA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0002671 tyrA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003211 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003065 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003035 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0002944 tyrA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177130 tyrA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0002936 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0002750 tyrA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133486 tyrA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005786 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0002941 tyrA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000466 tyrA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001547 tyrA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002931 tyrA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001255 tyrA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007764 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002314 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002535 tyrA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002338 tyrA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001667 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003101 tyrA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001052 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010786 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000770 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291033 tyrA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006142 tyrA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063652 tyrA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001959 tyrA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000865 tyrA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004224 tyrA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008266 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139616 tyrA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006980 tyrA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0000265 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003130 tyrA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007256 tyrA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0008457 tyrA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0008023 tyrA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006670 tyrA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007245 tyrA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008277 tyrA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006909 tyrA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008433 tyrA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006386 tyrA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007242 tyrA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005778 tyrA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002556 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002528 tyrA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003395 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007425 tyrA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008906 tyrA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006937 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008582 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111108 tyrA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084340 tyrA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003275 tyrA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0098420 tyrA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006649 tyrA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008593 tyrA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006658 tyrA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000260 tyrA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264928 tyrA CDS
Person Approved Go view Shigella boydii 227 ADV-0002909 tyrA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008397 tyrA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008088 tyrA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003166 tyrA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0073995 tyrA CDS
Person Approved Go view Shigella flexneri 301 ABT-0088911 tyrA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003064 tyrA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003009 tyrA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000755 VC0696 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002248 tyrA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003063 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002625 tyrA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003994 tyrA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003731 tyrA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003294 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235122 tyrA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007604 tyrA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003431 tyrA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007066 tyrA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004063 tyrA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126372 tyrA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006534 tyrA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006023 tyrA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003610 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006005 tyrA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004360 tyrA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030548 tyrA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007467 tyrA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000993 tyrA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003500 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004851 tyrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007228 tyrA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000889 tyrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001040 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003979 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003737 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002016 tyrA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20865mutantTn5 InsertionRequest the StrainABE-0008547tyrAtyrA::Tn5KAN-I-SceI at position 491 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2733948 to 2745069
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0008527clpBCDScomplement27316002734173Downstream
ABE-0285191ryfDncRNAcomplement27341532734295Downstream
ABE-0008530yfiHCDScomplement27343032735034Downstream
ABE-0008532rluDCDScomplement27350312736011Downstream
ABE-0008536bamDCDSforward27361462736883Downstream
ABE-0008540raiACDSforward27371542737495Downstream
ABE-0285832raiZncRNAforward27373812737542Downstream
ABE-0008543pheLCDSforward27375992737646Downstream
ABE-0008545pheACDSforward27377452738905Downstream
ABE-0285533repeat_regionforward27389152738938Downstream
ABE-0008547tyrACDScomplement27389482740069Matches
ABE-0008549aroFCDScomplement27400802741150Upstream
ABE-0008565yfiLCDSforward27413602741725Upstream
ABE-0008568yfiRCDSforward27418752742393Upstream
ABE-0008570dgcNCDSforward27423832743609Upstream
ABE-0008572yfiBCDSforward27436252744107Upstream
ABE-0008574rplSCDScomplement27441832744530Upstream
ABE-0008576trmDCDScomplement27445722745339Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.